Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102305
Name   oriT_pROT12-5.2 in_silico
Organism   Rhodanobacter sp. T12-5
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_NPKN01000014 (484..505 [+], 22 nt)
oriT length   22 nt
IRs (inverted repeats)      1..8, 15..22  (AAAGTGTA..TACACTTT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 22 nt

>oriT_pROT12-5.2
AAAGTGTAGTGTGTTACACTTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1763 GenBank   WP_053082646
Name   mobV_CIW53_RS17495_pROT12-5.2 insolico UniProt ID   A0A5A7VNR4
Length   448 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 448 a.a.        Molecular weight: 52610.62 Da        Isoelectric Point: 9.3407

>WP_053082646.1 MULTISPECIES: MobV family relaxase [Terrabacteria group]
MSYSIIRMQKMKSNGIKGIQFHNQRERESETNPDINKADSHLNYDLINGQRQIDYNEKISQVIEDNVTSG
KKIRKDAVKLAEFLITSDKEFFDKISPKEQKRYFETAHEFLADRYGEKNLIYATVHYDEKTPHMHVGFVP
VTEDGRLSAKDFFGQKKQLVSLQDDFNQYLKQNDFNLERGVSSSRKHVETAKYKAQTFQSMEKEAQEKYE
RTMGHIQEIDDKSKSIANIEAKKVLGLVGMKEQDYKSLVDYATNGVAYQLQAENLQKELEKTQKEVTQLK
ADMQIGQDKIRYYYKDIEENLDSLAEKKALQKVKQTDIVKNYGDLIEKYNGLVNKYNDQLKEKKELKQQV
DTLKIENRSYQNENRELKLENGKLKGKLVQISKEFSVFKERVGKVLHAQLDRVKTFLRMNDVDRSTIKFL
DDRQDKLVQDSLEKMEKPQRQKGMEMER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-195)


  Protein structure


Source ID Structure
AlphaFold DB A0A5A7VNR4


Host bacterium

ID   2749 GenBank   NZ_NPKN01000014
Plasmid name   pROT12-5.2 Incompatibility group   -
Plasmid size   4824 bp Coordinate of oriT [Strand]   484..505 [+]
Host baterium   Rhodanobacter sp. T12-5

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -