Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102257
• Name: oriT_16-164-1|unnamed4
• Organism: Enterococcus faecium strain 16-164-1
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_PHLD01000007 (1575..1600 [+], 26 nt)
• oriT length: 26 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 26 nt

>oriT_16-164-1|unnamed4
AAGTCTAGTGGGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_CWC50_RS13020_16-164-1|unnamed4

• ID: 1737
• GenBank: WP_242441820
• Name: mobV_CWC50_RS13020_16-164-1|unnamed4
• UniProt ID: _
• Length: 329 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 329 a.a.
• Molecular weight: 38270.23 Da
• Isoelectric Point: 9.5853

>WP_242441820.1 MobV family relaxase [Enterococcus faecium]
MSFAVARMQKVKSGNLVGVGNHNQRNTDNHSNKDIDVERSHLNYDLVNRTENYKRDIEQFINDNKSSSRA
VRKDAVLINEWIITSDNPFFKDKDDKEIKDFFDTAKSYFADKFGDNNIRYAQVHLDETTPHMHLGIVPFN
DEHKLSAKTVFNRQALQAVQDELPKYLNERGFELERGEKGSERKNLTVPEYKKAKDELKEITTTLEQRKS
EVLALSNDKAPTIKKESLDLKDETKTVKVPSGETIGIGKLRHEFMKNEERKTGNVIIPESKLNAVIKSYE
ELYKANEKLKNYAETDLPKEITRVKEKYRELAKDYNRLVRKRVLLQSFK

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-193)

Protein structure

No available structure.

Host bacterium

• ID: 2701
• GenBank: NZ_PHLD01000007
• Plasmid name: 16-164-1|unnamed4
• Incompatibility group: -
• Plasmid size: 2780 bp
• Coordinate of oriT [Strand]: 1575..1600 [+]
• Host baterium: Enterococcus faecium strain 16-164-1

Cargo genes

• Drug resistance gene: cat
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -