Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102239
• Name: oriT_UCI 36|unnamed3
• Organism: Staphylococcus aureus strain UCI 36
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_LLAB01000093 (1798..1833 [-], 36 nt)
• oriT length: 36 nt
• IRs (inverted repeats): 4..10, 14..20 (GCGAACG..CGTTCGC)
• Location of nic site: 29..30
• Conserved sequence flanking the nic site: GTGCGCCCTT
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 36 nt

>oriT_UCI 36|unnamed3
CACGCGAACGGAACGTTCGCATAAGTGCGCCCTTAC

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_APW72_RS05585_UCI 36|unnamed3

• ID: 1727
• GenBank: WP_172411034
• Name: MobA_MobL_APW72_RS05585_UCI 36|unnamed3
• UniProt ID: _
• Length: 428 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 428 a.a.
• Molecular weight: 50355.24 Da
• Isoelectric Point: 6.2758

>WP_172411034.1 MobA/MobL family protein, partial [Staphylococcus aureus]
MAMYHFQNKFVSKANGQSATAKSAYNSASRIKDFKENEFKDYSNKQCDYSEILLPNNADDKFKDREYLWN
KVHDVENRKNSQVAREIIIGLPNEFDPNSNIELAKEFAESLSNEGMIVDLNIHKINEENPHAHLLCTLRG
LDKNNEFEPKRKGNDYIRDWNTKEKHNEWRKRWENVQNKHLEKNGFSVRVSADSYKNQNIDLEPTKKEGW
KARKFEDETGKKSSISKHNESIKKRNQQKIDKMFNEVDDMKSHKLNAFSYMNKSDSTTLKNMAKDLKIYV
TPINMYKENERLYDLKQKTSLITDDEDRLNKIEDIEDRQKKLESINEVFEKQAGIFFDKNYPDQSLNYSD
DEKIFITRTILNDRDVLPANNELEDIVKEKRIKEAQISLNTVLGNRDISLESIEKESNFFADKLSNILEK
NNLSFDDV

Protein domains

Predicted by InterproScan.

• Nicking enzyme C-terminal middle helical domain (NES_C_h) (265-360)

• MobA/MobL family (MobA_MobL) (17-216)

Protein structure

No available structure.

Host bacterium

• ID: 2683
• GenBank: NZ_LLAB01000093
• Plasmid name: UCI 36|unnamed3
• Incompatibility group: -
• Plasmid size: 3196 bp
• Coordinate of oriT [Strand]: 1798..1833 [-]
• Host baterium: Staphylococcus aureus strain UCI 36

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -