Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102235 |
| Name | oriT_UCI 39|unnamed8  |
| Organism | Staphylococcus aureus strain UCI 39 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LLAE01000020 (1511..1699 [+], 189 nt) |
| oriT length | 189 nt |
| IRs (inverted repeats) | 167..172, 180..185 (AGCAAA..TTTGCT) 149..156, 161..168 (CTATCATT..AATGATAG) 132..138, 142..148 (GTCTGGC..GCCAGAC) 71..76, 88..93 (AAAAGC..GCTTTT) 64..70, 77..83 (GTGTCAC..GTGACAC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 189 nt
>oriT_UCI 39|unnamed8
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCTCAAAACTGTGACAACCGCAATATATTGTGTCACAAAAGCGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTAGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTTTGCTCTTA
TGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCTCAAAACTGTGACAACCGCAATATATTGTGTCACAAAAGCGTGACACTACAGCTTTTTATGATATCACTTTAAAATTACTTAAAACCCTTAGAATGTCTGGCTTTGCCAGACCTATCATTTTTGAATGATAGCAAATTCTCCTTTTGCTCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2679 | GenBank | NZ_LLAE01000020 |
| Plasmid name | UCI 39|unnamed8 | Incompatibility group | - |
| Plasmid size | 2509 bp | Coordinate of oriT [Strand] | 1511..1699 [+] |
| Host baterium | Staphylococcus aureus strain UCI 39 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |