Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 102214 |
Name | oriT_ISU 973|unnamed2 |
Organism | Staphylococcus aureus strain ISU 973 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_LKYD01000133 (7718..7758 [-], 41 nt) |
oriT length | 41 nt |
IRs (inverted repeats) | 2..8, 13..19 (ACTTTAT..ATAAAGT) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 41 nt
>oriT_ISU 973|unnamed2
CACTTTATGAATATAAAGTATAATGTGTTATACTTTACATG
CACTTTATGAATATAAAGTATAATGTGTTATACTTTACATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 1711 | GenBank | WP_015382137 |
Name | mobV_APW04_RS08800_ISU 973|unnamed2 | UniProt ID | L8BAH8 |
Length | 409 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 409 a.a. Molecular weight: 48447.75 Da Isoelectric Point: 7.0106
>WP_015382137.1 MULTISPECIES: MobV family relaxase [Bacilli]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIY
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMSR
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIY
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMSR
Protein domains
Predicted by InterproScan.
Protein structure
Source | ID | Structure |
---|---|---|
AlphaFold DB | L8BAH8 |
Host bacterium
ID | 2658 | GenBank | NZ_LKYD01000133 |
Plasmid name | ISU 973|unnamed2 | Incompatibility group | - |
Plasmid size | 8046 bp | Coordinate of oriT [Strand] | 7718..7758 [-] |
Host baterium | Staphylococcus aureus strain ISU 973 |
Cargo genes
Drug resistance gene | aadD, tet(T) |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |