Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102206
Name   oriT_ISU 881|unnamed11 in_silico
Organism   Staphylococcus aureus strain ISU 881
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LKWD01000045 (1256..1294 [+], 39 nt)
oriT length   39 nt
IRs (inverted repeats)      1..6, 11..16  (CTTTAT..ATAAAG)
Location of nic site      25..26
Conserved sequence flanking the
  nic site    		  GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 39 nt

>oriT_ISU 881|unnamed11
CTTTATGAATATAAAGWATAGTGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1707 GenBank   WP_095259612
Name   mobV_APV75_RS03990_ISU 881|unnamed11 insolico UniProt ID   _
Length   347 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 347 a.a.        Molecular weight: 40952.21 Da        Isoelectric Point: 5.4698

>WP_095259612.1 MobV family relaxase [Staphylococcus aureus]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKIKSV

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   2650 GenBank   NZ_LKWD01000045
Plasmid name   ISU 881|unnamed11 Incompatibility group   -
Plasmid size   2873 bp Coordinate of oriT [Strand]   1256..1294 [+]
Host baterium   Staphylococcus aureus strain ISU 881

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -