Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102173 |
| Name | oriT_UCI 53|unnamed5  |
| Organism | Staphylococcus aureus strain UCI 53 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LLAS01000097 (1561..1596 [-], 36 nt) |
| oriT length | 36 nt |
| IRs (inverted repeats) | 4..10, 14..20 (GCGAACG..CGTTCGC) |
| Location of nic site | 29..30 |
| Conserved sequence flanking the nic site |
GTGCGCCCTT |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 36 nt
>oriT_UCI 53|unnamed5
CACGCGAACGGAACGTTCGCATAAGTGCGCCCTTAC
CACGCGAACGGAACGTTCGCATAAGTGCGCCCTTAC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1686 | GenBank | WP_172408531 |
| Name | MobA_MobL_APW89_RS14810_UCI 53|unnamed5 |
UniProt ID | _ |
| Length | 158 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 158 a.a. Molecular weight: 18372.45 Da Isoelectric Point: 6.3408
>WP_172408531.1 MobA/MobL family protein, partial [Staphylococcus aureus]
MAMYHFQNKFVSKANGQSATAKSAYNSASRIKDFKENEFKDYSNKQCDYSEILLPNNADDKFKDREYLWN
KVHDVENRKNSQVAREIIIGLPNEFDPNSNIELAKEFAESLSNEGMIVDLNIHKINEENPHAHLLCTLRG
LDKNNEFEPKRKGNDYIR
MAMYHFQNKFVSKANGQSATAKSAYNSASRIKDFKENEFKDYSNKQCDYSEILLPNNADDKFKDREYLWN
KVHDVENRKNSQVAREIIIGLPNEFDPNSNIELAKEFAESLSNEGMIVDLNIHKINEENPHAHLLCTLRG
LDKNNEFEPKRKGNDYIR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2617 | GenBank | NZ_LLAS01000097 |
| Plasmid name | UCI 53|unnamed5 | Incompatibility group | - |
| Plasmid size | 2149 bp | Coordinate of oriT [Strand] | 1561..1596 [-] |
| Host baterium | Staphylococcus aureus strain UCI 53 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |