Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102170
• Name: oriT_MN 50|unnamed5
• Organism: Staphylococcus aureus strain MN 50
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_LLBU01000092 (8668..8708 [+], 41 nt)
• oriT length: 41 nt
• IRs (inverted repeats): 14..22, 29..37 (TAAAGTATA..TATACTTTA) 2..8, 13..19 (ACTTTAT..ATAAAGT)
• Location of nic site: 27..28
• Conserved sequence flanking the nic site: GTGTGTTATA
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 41 nt

>oriT_MN 50|unnamed5
CACTTTATGAATATAAAGTATAGTGTGTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_APW26_RS08185_MN 50|unnamed5

• ID: 1684
• GenBank: WP_095341093
• Name: mobV_APW26_RS08185_MN 50|unnamed5
• UniProt ID: _
• Length: 409 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 409 a.a.
• Molecular weight: 48467.50 Da
• Isoelectric Point: 7.0106

>WP_095341093.1 MobV family relaxase [Staphylococcus aureus]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDXYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIY
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-193)

Protein structure

No available structure.

Host bacterium

• ID: 2614
• GenBank: NZ_LLBU01000092
• Plasmid name: MN 50|unnamed5
• Incompatibility group: -
• Plasmid size: 10434 bp
• Coordinate of oriT [Strand]: 8668..8708 [+]
• Host baterium: Staphylococcus aureus strain MN 50

Cargo genes

• Drug resistance gene: tet(T), aadD, tet(L)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -