Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102161 |
| Name | oriT_UCI 40|unnamed14  |
| Organism | Staphylococcus aureus strain UCI 40 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LLAF01000094 (1910..2098 [-], 189 nt) |
| oriT length | 189 nt |
| IRs (inverted repeats) | 149..156, 161..168 (CTATCATT..AATGATAG) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 189 nt
>oriT_UCI 40|unnamed14
TGWCTTATTTTTGTGWCAAATGCTGTATGTAGWGTMACAAAAATAAGACAAACGCAATATATTGWGTCACAAAAATAAGACAGTACAGCTTTGTATGATATMACTTTAAAATGCCTTAAAWCMMCYGGAATTTCTGGCTTTGYCAGWCCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTA
TGWCTTATTTTTGTGWCAAATGCTGTATGTAGWGTMACAAAAATAAGACAAACGCAATATATTGWGTCACAAAAATAAGACAGTACAGCTTTGTATGATATMACTTTAAAATGCCTTAAAWCMMCYGGAATTTCTGGCTTTGYCAGWCCTATCATTTTTGAATGATAGCAAATTCTCCTTATGCTCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2605 | GenBank | NZ_LLAF01000094 |
| Plasmid name | UCI 40|unnamed14 | Incompatibility group | - |
| Plasmid size | 3821 bp | Coordinate of oriT [Strand] | 1910..2098 [-] |
| Host baterium | Staphylococcus aureus strain UCI 40 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |