Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 102144
• Name: oriT_ISU 998|unnamed4
• Organism: Staphylococcus aureus strain ISU 998
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_LKYQ01000011 (8102..8143 [+], 42 nt)
• oriT length: 42 nt
• IRs (inverted repeats): 14..22, 30..38 (TAAAGTATA..TATACTTTA) 12..17, 28..33 (TATAAA..TTTATA) 2..8, 13..19 (ACTTTAT..ATAAAGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 42 nt

>oriT_ISU 998|unnamed4
CACTTTATGAATATAAAGTATAGTGTGTTTATACTTTACATG

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobV_APW17_RS01730_ISU 998|unnamed4

• ID: 1674
• GenBank: WP_095337848
• Name: mobV_APW17_RS01730_ISU 998|unnamed4
• UniProt ID: _
• Length: 409 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 409 a.a.
• Molecular weight: 48426.73 Da
• Isoelectric Point: 7.0112

>WP_095337848.1 MobV family relaxase [Staphylococcus aureus]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYXTVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDXXQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIX
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMSR

Protein domains

Predicted by InterproScan.

• Plasmid recombination enzyme (Mob_Pre) (1-193)

Protein structure

No available structure.

Host bacterium

• ID: 2588
• GenBank: NZ_LKYQ01000011
• Plasmid name: ISU 998|unnamed4
• Incompatibility group: -
• Plasmid size: 10184 bp
• Coordinate of oriT [Strand]: 8102..8143 [+]
• Host baterium: Staphylococcus aureus strain ISU 998

Cargo genes

• Drug resistance gene: tet(T), aadD, tet(L)
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -