Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102103 |
| Name | oriT_ARPG-380|unnamed20  |
| Organism | Klebsiella pneumoniae strain ARPG-380 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_NBON01000066 (648..698 [+], 51 nt) |
| oriT length | 51 nt |
| IRs (inverted repeats) | 6..13, 16..23 (GCAAAATT..AATTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 51 nt
>oriT_ARPG-380|unnamed20
AATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGGTATTTTTAGTGGTGAG
AATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGGTATTTTTAGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2547 | GenBank | NZ_NBON01000066 |
| Plasmid name | ARPG-380|unnamed20 | Incompatibility group | Col440I |
| Plasmid size | 4294 bp | Coordinate of oriT [Strand] | 648..698 [+] |
| Host baterium | Klebsiella pneumoniae strain ARPG-380 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |