Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102096 |
| Name | oriT_pCD1  |
| Organism | Yersinia pestis subsp. microtus bv. Altaica strain SCPM-O-DNA-02 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MIED01000009 (1379..1438 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pCD1
GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
GGGTGTCGGGGCGCAGCCATGACCCAGTCACGTAGCGATAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2540 | GenBank | NZ_MIED01000009 |
| Plasmid name | pCD1 | Incompatibility group | ColRNAI |
| Plasmid size | 7909 bp | Coordinate of oriT [Strand] | 1379..1438 [+] |
| Host baterium | Yersinia pestis subsp. microtus bv. Altaica strain SCPM-O-DNA-02 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | pla |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |