Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102046
Name   oriT_ISU 971|unnamed4 in_silico
Organism   Staphylococcus aureus strain ISU 971
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LKYB01000131 (8484..8520 [+], 37 nt)
oriT length   37 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 37 nt

>oriT_ISU 971|unnamed4
TTATGAATATAAAGTATAATGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1635 GenBank   WP_095239973
Name   mobV_APW02_RS08745_ISU 971|unnamed4 insolico UniProt ID   _
Length   409 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 409 a.a.        Molecular weight: 48509.58 Da        Isoelectric Point: 7.0106

>WP_095239973.1 MobV family relaxase [Staphylococcus aureus]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKXSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIY
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   2490 GenBank   NZ_LKYB01000131
Plasmid name   ISU 971|unnamed4 Incompatibility group   -
Plasmid size   9807 bp Coordinate of oriT [Strand]   8484..8520 [+]
Host baterium   Staphylococcus aureus strain ISU 971

Cargo genes

Drug resistance gene   tet(T), aadD, tet(L)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -