Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102040
Name   oriT_ISU 979|unnamed2 in_silico
Organism   Staphylococcus aureus strain ISU 979
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LKYG01000095 (1776..1816 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 41 nt

>oriT_ISU 979|unnamed2
CACTTTATGAATATAAAGTATAATGTGTTATWCTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1631 GenBank   WP_095337476
Name   mobV_APW07_RS05810_ISU 979|unnamed2 insolico UniProt ID   _
Length   409 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 409 a.a.        Molecular weight: 48479.56 Da        Isoelectric Point: 7.0106

>WP_095337476.1 MobV family relaxase [Staphylococcus aureus]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIY
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMXR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-193)


  Protein structure



No available structure.




Host bacterium

ID   2484 GenBank   NZ_LKYG01000095
Plasmid name   ISU 979|unnamed2 Incompatibility group   -
Plasmid size   10064 bp Coordinate of oriT [Strand]   1776..1816 [+]
Host baterium   Staphylococcus aureus strain ISU 979

Cargo genes

Drug resistance gene   tet(L), tet(T)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -