Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   102025
Name   oriT1_ISU 919|unnamed3 in_silico
Organism   Staphylococcus aureus strain ISU 919
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LKWS01000049 (5650..5690 [+], 41 nt)
oriT length   41 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 41 nt

>oriT1_ISU 919|unnamed3
CACTTTATGAATATAAAGTATAATGTGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1616 GenBank   WP_095303759
Name   Relaxase_APV55_RS03580_ISU 919|unnamed3 insolico UniProt ID   _
Length   335 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 335 a.a.        Molecular weight: 38921.29 Da        Isoelectric Point: 6.5973

>WP_095303759.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus aureus]
MATTKLXATKSTXRAINYAEKRAEEKSGLNCDIDYAKSSFKATRELYGKTGGNEGXVIIQSFKPGEVTPE
QCNQLGLALAEKFAPNHQVAVYTHNDTDHVHNHIVINSIDLETGKKFNNNKQXLRDLRDFNDDVCREHSX
SVXEKDTARLRYTQTEKAIADXNTKSTXQYXWKDEIREAIDQSTATNMDEFKDHLSQYGIEIARVTPKSI
TYRHLAEDKKXRGRRLGEDYXKGXIEDGFERQIQRQQQEREDDNDIQXKRPTSNRDEPTQRXXGVTQSDW
DKFAQDTNEJKRRRQAAESARLADEXARRDREEREREXQXTRTXXXNXRDHGLEL

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-242)


  Protein structure



No available structure.




Host bacterium

ID   2469 GenBank   NZ_LKWS01000049
Plasmid name   ISU 919|unnamed3 Incompatibility group   -
Plasmid size   14680 bp Coordinate of oriT [Strand]   5650..5690 [+]; 11187..11306 [-]
Host baterium   Staphylococcus aureus strain ISU 919

Cargo genes

Drug resistance gene   aadD, vga(A)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -