Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 102015 |
| Name | oriT_ISU 912|unnamed6  |
| Organism | Staphylococcus aureus strain ISU 912 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LKWL01000095 (2001..2120 [+], 120 nt) |
| oriT length | 120 nt |
| IRs (inverted repeats) | 52..59, 61..68 (TTGGGGAT..ATCCCCAA) 23..30, 34..41 (ATTTTTTC..GAAAAAAT) 1..8, 14..21 (AGTGGCTA..TAGCCACT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 120 nt
>oriT_ISU 912|unnamed6
AGTGGCTAGCAATTAGCCACTTATTTTTTCGCAGAAAAAATCCTAAGGGGCTTGGGGATCATCCCCAACAAGCAGGCGTCGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
AGTGGCTAGCAATTAGCCACTTATTTTTTCGCAGAAAAAATCCTAAGGGGCTTGGGGATCATCCCCAACAAGCAGGCGTCGCTACCACGTTAGTGGCTAGCAAAGCCAATGCTTGCCAAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1608 | GenBank | WP_095302662 |
| Name | Relaxase_APV67_RS08065_ISU 912|unnamed6 |
UniProt ID | _ |
| Length | 335 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 335 a.a. Molecular weight: 38631.92 Da Isoelectric Point: 7.0244
>WP_095302662.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus aureus]
MATTKLSATKSTSRAINYAEKRAEEKSGXNCDIDXAKXSXKATREXYGKTXGNEXHVXIQSFKPGEVTXE
QCNQLGLAJAEKFAPNHQXAVYTHNDTXHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDDVCREHSL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSTATNMDEFKDHLSQYGIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQEREDDNDIQPKRPTSNRDEPTQRDTGVTQSDW
DKXAQDTNELKRRRQAAESARLADEKARRDREERERAKQASRTIIDNDRXHXLEL
MATTKLSATKSTSRAINYAEKRAEEKSGXNCDIDXAKXSXKATREXYGKTXGNEXHVXIQSFKPGEVTXE
QCNQLGLAJAEKFAPNHQXAVYTHNDTXHVHNHIVINSIDLETGKKFNNNKQALRDLRDFNDDVCREHSL
SVPEKDTARLRYTQTEKAIADPNTKSTAQYSWKDEIREAIDQSTATNMDEFKDHLSQYGIEIARVTPKSI
TYRHLAEDKKVRGRRLGEDYNKGGIEDGFERQIQRQQQEREDDNDIQPKRPTSNRDEPTQRDTGVTQSDW
DKXAQDTNELKRRRQAAESARLADEKARRDREERERAKQASRTIIDNDRXHXLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2459 | GenBank | NZ_LKWL01000095 |
| Plasmid name | ISU 912|unnamed6 | Incompatibility group | - |
| Plasmid size | 6466 bp | Coordinate of oriT [Strand] | 2001..2120 [+] |
| Host baterium | Staphylococcus aureus strain ISU 912 |
Cargo genes
| Drug resistance gene | vga(A) |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |