Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   102010
Name   oriT1_ISU 1010|unnamed3 in_silico
Organism   Staphylococcus aureus strain ISU 1010
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_LKVP01000004 (1..33 [-], 33 nt)
oriT length   33 nt
IRs (inverted repeats)      2..8, 13..19  (ACTTTAT..ATAAAGT)
Location of nic site      27..28
Conserved sequence flanking the
  nic site  
 
 GTGTGTTATA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 33 nt

>oriT1_ISU 1010|unnamed3
CACTTTATGAATATAAAGTATAGTGTGTTATAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase


ID   1604 GenBank   WP_015382137
Name   mobV_APV50_RS01000_ISU 1010|unnamed3 insolico UniProt ID   L8BAH8
Length   409 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 409 a.a.        Molecular weight: 48447.75 Da        Isoelectric Point: 7.0106

>WP_015382137.1 MULTISPECIES: MobV family relaxase [Bacilli]
MSMIVARMQKMKAENLVGIGNHNQRKTKNHSNPDIDTSLSKLNYDLVDRTQNYKTDIENFINENKTTTRA
VRKDAVLVNEWIISSDKDFFDNLTESEIENFFERSKDYFAEKFGEKNIRYATVHLDESTPHMHMGIVPFD
KDNKLSAKRVFNRQALRDVQEELPKYLQDFQFEIERGQKGSERKNLTVPEFKKLKEEEREIKKELEIKKD
ELMAYTKENKIDKEIDITPIKEMEDVEIETDEKSLFGITKTKTVRQWTGNIVLSEKDYLKLRQKVNKGKQ
AEGKLEAILETDVYQENKELKNELKDQIDKNDKDIDDYNDLVKRYNNLYEENTSLKNQIGDLKEEIKLIY
QSTKRFFKDRISDFKAFKEVFKELADSISNISREKGLDSSFKKEFDRENKKKRTKGMSR

  Protein domains


Predicted by InterproScan.

(1-193)


  Protein structure


Source ID Structure
AlphaFold DB L8BAH8


Host bacterium


ID   2454 GenBank   NZ_LKVP01000004
Plasmid name   ISU 1010|unnamed3 Incompatibility group   -
Plasmid size   10392 bp Coordinate of oriT [Strand]   1..33 [-]; 9262..9302 [-]
Host baterium   Staphylococcus aureus strain ISU 1010

Cargo genes


Drug resistance gene   tet(L), aadD, tet(T)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -