Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 101987
• Name: oriT_FWSEC0517|unnamed2
• Organism: Escherichia coli strain FWSEC0517
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_RRRR01000105 (3278..3369 [+], 92 nt)
• oriT length: 92 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 92 nt

>oriT_FWSEC0517|unnamed2
CGGGGTGTCGGGGCTAAGCCCTGACCAGGTGGTAATCGTATAGCCGTGCGTGCGCGGTTATACGATTACACATCCTGTCCCGTTTTTCAGGC

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_C9287_RS24110_FWSEC0517|unnamed2

• ID: 1589
• GenBank: WP_047086377
• Name: Relaxase_C9287_RS24110_FWSEC0517|unnamed2
• UniProt ID: _
• Length: 906 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 906 a.a.
• Molecular weight: 104806.17 Da
• Isoelectric Point: 7.8733

>WP_047086377.1 relaxase/mobilization nuclease domain-containing protein [Escherichia coli]
MNAIIPKKRRDGKSSFEDLIAYTSVRDDVPEDELRPDTEVKGEVPHRNRFRRLVDYATRLRNEKFVSLID
VMKDGSQWVNFYGVTCFHNCLSLESAAEEMQKAADLAHFSKDDTDPVFHYILSWPAHESPRSEQLFDCVR
HTLKSLELSKHQYVAAVHTDTDNLHVHVAVNRVHPETGYINCLPWSQEKLSRACRELELKHGFAPDNGCF
VHAPGNRIVRKTALVRERRNAWRRGKKQTFREYIAQMSIAGLREEPAQDWLSLHKRLASDGLYITMQEGE
LVVKDGWDRSREGIALSSFGPSWTAEKLGRKLGEYQPVPTDIFSQVEAPGRYDPEAINVDIRPEKVAETE
SLKQYASRHFAERLPAMARNGELKSCLAVHRTLAEAGLWMGIQHGHLVLHDGFDKQQTPVRADSVWPLMT
LDYMQDLDGGWQPVPKDIFTQVVPGERFRGHSIGSQPVSDYEWYRMRMGTGPQGAIKRELFSDKESLWGY
GLIQCRSLIEEMIADGDFSWQACHEMFARKGLMLQKQHHGLVIVDAFNHELTPVKASSIHPDLTLSRAEP
QAGPFEIAAADIFERVKPECRYNPELAASDEVEPGFRRDPELRRERREARAAAREDLRARYLAWKEHWRK
PDLRYGERLREIHAACHRRKAHIRVQFRDPQVRKLHYHIAEVQRMQALIRLKENVREERLALMAEGKWYP
LSYRQWVEQQAAQGDRAAVSQLRGWDYRDRRSRNKDKRRTTNADRCVVLCEPGGTPLFNNVAKLEARLQK
NGSVHFRDTRTGKNVCTDYGDRVVFYHHNDRNELAEKLDLIAPVLFSRNGKLGFEPEGSYQQFNDVFAEM
VAWHNAAGITGNGHFTISRPDVDLHRQRSEEYYHEYIRQQTRLSESHDENYSSRQENTWVPPSPGM

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (62-315)

Protein structure

No available structure.

Auxiliary protein

WP_001291056_FWSEC0517|unnamed2

• ID: 646
• GenBank: WP_001291056
• Name: WP_001291056_FWSEC0517|unnamed2
• UniProt ID: A0A4P8CE48
• Length: 110 a.a.
• PDB ID: _
• Note: Predicted by oriTfinder 2.0

Auxiliary protein sequence

• Length: 110 a.a.
• Molecular weight: 12597.68 Da
• Isoelectric Point: 10.6096

>WP_001291056.1 MULTISPECIES: plasmid mobilization protein MobA [Enterobacteriaceae]
MSEKKTRSGSEKRQKNVLIAVRFSPEEAEIVKEKAEKNGLTVSTLIRKTVLGKQINARIDEDFLKELMRL
GRLQKHLFVEGKRTGDKEYAEVLVAITELANTLRRDLMGR

Protein domains

Predicted by InterproScan.

• Family of unknown function (DUF6290) (DUF6290) (19-66)

Protein structure

• AlphaFold DB: A0A4P8CE48

Host bacterium

• ID: 2431
• GenBank: NZ_RRRR01000105
• Plasmid name: FWSEC0517|unnamed2
• Incompatibility group: -
• Plasmid size: 19022 bp
• Coordinate of oriT [Strand]: 3278..3369 [+]
• Host baterium: Escherichia coli strain FWSEC0517

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -