Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101963 |
| Name | oriT_UCI 3|unnamed4  |
| Organism | Staphylococcus aureus strain UCI 3 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_LKYU01000133 (1514..1697 [+], 184 nt) |
| oriT length | 184 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 184 nt
>oriT_UCI 3|unnamed4
TATTTTTGTGACAAATGCTGTATGWAGTGWCACAAAAATAAGACAAACGCAATATATTKTGYCACAAAAATAAGACAGTACAGYTTTGTATGATATCACTTTAAAATACCTTAAAACCMCTGKAATTTCTGGCTTTGYCAKACCTAWCATTTTTGAATGATADCAAATTCTMCTTATGCTCTTA
TATTTTTGTGACAAATGCTGTATGWAGTGWCACAAAAATAAGACAAACGCAATATATTKTGYCACAAAAATAAGACAGTACAGYTTTGTATGATATCACTTTAAAATACCTTAAAACCMCTGKAATTTCTGGCTTTGYCAKACCTAWCATTTTTGAATGATADCAAATTCTMCTTATGCTCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2407 | GenBank | NZ_LKYU01000133 |
| Plasmid name | UCI 3|unnamed4 | Incompatibility group | - |
| Plasmid size | 3722 bp | Coordinate of oriT [Strand] | 1514..1697 [+] |
| Host baterium | Staphylococcus aureus strain UCI 3 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |