Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101931 |
| Name | oriT_SMo01|unnamed1  |
| Organism | Salmonella enterica subsp. enterica serovar Montevideo strain SMo01 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_MATD01000001 (5486..5545 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_SMo01|unnamed1
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1563 | GenBank | WP_171843238 |
| Name | Relaxase_BBC49_RS00045_SMo01|unnamed1 |
UniProt ID | _ |
| Length | 131 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 131 a.a. Molecular weight: 14913.08 Da Isoelectric Point: 9.5894
>WP_171843238.1 relaxase/mobilization nuclease domain-containing protein, partial [Salmonella enterica]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGKRLQPYYDRADRPR
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYAKKYTSGVLSFAEKDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLTGKRLQPYYDRADRPR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 633 | GenBank | WP_023343076 |
| Name | WP_023343076_SMo01|unnamed1 |
UniProt ID | A0A625XR88 |
| Length | 161 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 161 a.a. Molecular weight: 18085.72 Da Isoelectric Point: 10.0592
>WP_023343076.1 MULTISPECIES: MbeB family mobilization protein [Bacteria]
MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMVSQTWLTIVLVSVLLIASNAAILWWQSQQILDNYVSIREQKSTQAMLSERNSGVQLSTCGEQRRRCV
RVNPEAGRFGEDSSWMILAGK
MNSLLTLAKDLEQKSKAQQQSTGEMLKAAFSEHEKSVRAELSESEKRISAAILDHDRKLSSAMSQRTKGM
LRMVSQTWLTIVLVSVLLIASNAAILWWQSQQILDNYVSIREQKSTQAMLSERNSGVQLSTCGEQRRRCV
RVNPEAGRFGEDSSWMILAGK
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A625XR88 |
| ID | 634 | GenBank | WP_001445156 |
| Name | WP_001445156_SMo01|unnamed1 |
UniProt ID | K4I175 |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11755.49 Da Isoelectric Point: 7.8963
>WP_001445156.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQVVAALMAIDAGLERLRHAVLEKGADDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | K4I175 |
Host bacterium
| ID | 2375 | GenBank | NZ_MATD01000001 |
| Plasmid name | SMo01|unnamed1 | Incompatibility group | ColRNAI |
| Plasmid size | 6364 bp | Coordinate of oriT [Strand] | 5486..5545 [-] |
| Host baterium | Salmonella enterica subsp. enterica serovar Montevideo strain SMo01 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |