Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101904
Name   oriT_15f|unnamed contig073 in_silico
Organism   Levilactobacillus brevis strain 15f
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JXCD01000073 (548..575 [+], 28 nt)
oriT length   28 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 28 nt

>oriT_15f|unnamed contig073
TAAAGTATATTGGGCTATACCTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1555 GenBank   WP_043023448
Name   mobV_Lb15f_RS11690_15f|unnamed contig073 insolico UniProt ID   _
Length   363 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 363 a.a.        Molecular weight: 41993.40 Da        Isoelectric Point: 9.6412

>WP_043023448.1 MULTISPECIES: MobV family relaxase [Lactobacillaceae]
MSYLVANMQKLKADNLVGLGNHDQRRTQHHKNPDIDVDRSALNYDLVAGRTGHFKTDIEAYINEHKTSQR
AVRKDAVLVNEWIISSDSHFFADLTAADMRKYFETAKDYFAEKFGEENIRYAIVHLDESTPHMHMGIVPF
DDEHKLSAKRVFNRTALRDVQDQLPAYLQQHGFNIQRGVQESERKSLTVPEYKAMRESIKQSQQKLAAVE
NETKQRQAKLKTYQATKFDVNSVKTKESRFHKRYVLVDRFDFDKLKQGASLTDTYFTETLSQRSDMDIQK
DQLIKAESKAMELDIENRRLQKLVGTLQGIVRSVDRFLQRKLGVGLPSEWLERAGLKEPSKKAPQRPQER
SEGQHDKLDGPSL

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-194)


  Protein structure



No available structure.




Host bacterium

ID   2348 GenBank   NZ_JXCD01000073
Plasmid name   15f|unnamed contig073 Incompatibility group   -
Plasmid size   3495 bp Coordinate of oriT [Strand]   548..575 [+]
Host baterium   Levilactobacillus brevis strain 15f

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -