Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101903
Name   oriT_15f|unnamed contig036 in_silico
Organism   Levilactobacillus brevis strain 15f
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JXCD01000036 (4946..4966 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_15f|unnamed contig036
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1554 GenBank   WP_043023161
Name   mobQ_Lb15f_RS09750_15f|unnamed contig036 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80660.44 Da        Isoelectric Point: 9.6143

>WP_043023161.1 MobQ family relaxase [Levilactobacillus brevis]
MAIFHMNFSNISAGKGRSAIASAAYRSGEKLFDDQEGRHYFYARSVIPESFILTPKNAPAWASDREKLWN
EVERKDRRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDQGMVADVAIHRDHQDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKMYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIP
DRISEKSFENQGIDEVPTQHEGINSKRSKRKEFNQQVKKYRKTKANYKNNQEKVINRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMDIRDDLSVRQLLAFTKWPYVGWKLL
MQQEKEVKIELKYTLMIHDDSLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIKTQYHEVLK
RAFPNGNFNELPMIKQEQAYTAVMYYDPVLKPCQAETIEQWQANPPQVFSPQEHQQGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFLGECKADPTIKNSQIEKIQKQLKKQQAKDDQYRKVNIGHYQPLNYKPVSPSY
YLKTAFSNAIMTALYARDEDYERQRQARGLKETEWEMTKKQRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   2347 GenBank   NZ_JXCD01000036
Plasmid name   15f|unnamed contig036 Incompatibility group   -
Plasmid size   20874 bp Coordinate of oriT [Strand]   4946..4966 [-]
Host baterium   Levilactobacillus brevis strain 15f

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -