Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101888
Name   oriT_pEgFS4-1 in_silico
Organism   Enterococcus gallinarum strain FS4
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JAIWOW010000005 (22321..22358 [+], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      1..6, 10..15  (CTTTAC..GTAAAG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_pEgFS4-1
CTTTACGAAGTAAAGTATAGTGGGTTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1549 GenBank   WP_231477964
Name   Mob_Pre_K8356_RS15680_pEgFS4-1 insolico UniProt ID   _
Length   316 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 316 a.a.        Molecular weight: 36626.59 Da        Isoelectric Point: 9.6284

>WP_231477964.1 plasmid recombination protein [Enterococcus gallinarum]
MQILQSFRKSLLNDKIAIFSLTFKGNSFDNIRYAQVHLDETTPHMHLGIVPFNAEKRLSAKTLFNRQALQ
AVQDELPKYLNERGFELERGEKGSERKNLTVPEYKKAKDELKEMTTTLEQRKSEVLALSNDKTPTINKES
LDLKDETKTVKVPSGETIGIGKLRHEFTKNEERKTGNVIIPESKLNALIQGYEDLYKSNEQLKKYAETDL
PKRIDYVKGKYKEVVRDYNDLADRFNNNLEKIDSLEKENKSLKNEIKGIYRGFNQFMENTLGATVGQAKK
LMNNLVSEIKEFVKGGEFEKIHRNETRTRDRDELSR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(26-106)


  Protein structure



No available structure.




Host bacterium

ID   2332 GenBank   NZ_JAIWOW010000005
Plasmid name   pEgFS4-1 Incompatibility group   -
Plasmid size   38761 bp Coordinate of oriT [Strand]   22321..22358 [+]
Host baterium   Enterococcus gallinarum strain FS4

Cargo genes

Drug resistance gene   erm(B), cfr, optrA, aph(2'')-Ic, aadD, ant(9)-Ia, lnu(A)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -