Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101885 |
| Name | oriT_LBV029/18_pyometra|unnamed  |
| Organism | Escherichia coli strain LBV029/18_pyometra |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAPQMA010000223 (2880..3163 [-], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 245..250, 253..258 (CGCCCC..GGGGCG) 184..189, 197..202 (ATAAAA..TTTTAT) 130..138, 148..156 (GCGGTGTTG..CAACACCGC) 31..37, 42..48 (GCAAAAA..TTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_LBV029/18_pyometra|unnamed
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTCTTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCAACACCGCTTTTTAGGGGTGGTACTGACTATTTTCATAAAAAACATCATTTTATATTAGGGGTGCTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
Host bacterium
| ID | 2329 | GenBank | NZ_JAPQMA010000223 |
| Plasmid name | LBV029/18_pyometra|unnamed | Incompatibility group | ColRNAI |
| Plasmid size | 3406 bp | Coordinate of oriT [Strand] | 2880..3163 [-] |
| Host baterium | Escherichia coli strain LBV029/18_pyometra |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |