Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101854 |
| Name | oriT_pTUECL19004-3  |
| Organism | Enterobacter hormaechei strain TUECL19004 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAKCMG010000009 (1195..1254 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pTUECL19004-3
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1532 | GenBank | WP_045351254 |
| Name | Relaxase_LZ359_RS25450_pTUECL19004-3 |
UniProt ID | _ |
| Length | 498 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 498 a.a. Molecular weight: 55247.68 Da Isoelectric Point: 9.0935
>WP_045351254.1 relaxase/mobilization nuclease domain-containing protein [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEATEAITRGLLTLASSGELKNRQDVTEALERSGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRR
HPRTRAEYERGDGEKPAERTADCRADMVHHPDGVSAADRHEREHTVVAGAADNRQLHASSSAGRYPGEND
CPDVGSALSGEQRRPEVSYPAARDANRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIELRQRENEYQKTLELERQPQ
KTYRGPTL
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSGLPKTKQEATEAITRGLLTLASSGELKNRQDVTEALERSGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAAEYRRDAESRIQRARAVCQSGTERKREENQRR
HPRTRAEYERGDGEKPAERTADCRADMVHHPDGVSAADRHEREHTVVAGAADNRQLHASSSAGRYPGEND
CPDVGSALSGEQRRPEVSYPAARDANRSHPLRRDDMDPPETGVAENDRAGKAVAERIRAATAGLLAKAGR
MGERLRGMAEHVWAYATGERGAERARVGLEHAGAEFKRAAAPLVRELNAIELRQRENEYQKTLELERQPQ
KTYRGPTL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 613 | GenBank | WP_163063187 |
| Name | WP_163063187_pTUECL19004-3 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11810.62 Da Isoelectric Point: 9.5512
>WP_163063187.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Gammaproteobacteria]
MLTMWVTEGEHRRLLERCDGRPLAAWMRQTCLDEKPARTGKLPSLSPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
MLTMWVTEGEHRRLLERCDGRPLAAWMRQTCLDEKPARTGKLPSLSPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2298 | GenBank | NZ_JAKCMG010000009 |
| Plasmid name | pTUECL19004-3 | Incompatibility group | Col440II |
| Plasmid size | 4783 bp | Coordinate of oriT [Strand] | 1195..1254 [+] |
| Host baterium | Enterobacter hormaechei strain TUECL19004 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |