Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101813 |
| Name | oriT_pECC30-4  |
| Organism | Enterobacter hormaechei strain ECC30 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAIEUG010000005 (1178..1237 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pECC30-4
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1514 | GenBank | WP_220308913 |
| Name | Relaxase_K2J21_RS24405_pECC30-4 |
UniProt ID | _ |
| Length | 251 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 251 a.a. Molecular weight: 27655.30 Da Isoelectric Point: 7.3181
>WP_220308913.1 relaxase/mobilization nuclease domain-containing protein, partial [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTVVN
GRLGLLDPNAPENRRALVTPAGLPKTKQDAAEAITRGLLSLASSGELKSRHDVTEALERSGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAEEY
MIVKFHPRGRGGGAGPVDYLLGKDRQREGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHADKGRLELNFLIPNTELLTGRRLQPYYDRADRPRIDAWQTVVN
GRLGLLDPNAPENRRALVTPAGLPKTKQDAAEAITRGLLSLASSGELKSRHDVTEALERSGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAAIESAAEEY
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 607 | GenBank | WP_180264886 |
| Name | WP_180264886_pECC30-4 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11943.78 Da Isoelectric Point: 8.5732
>WP_180264886.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacter cloacae complex]
MLTMWVTEDEHRRLLERCEGRQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGMDDDR
MLTMWVTEDEHRRLLERCEGRQLAAWMRQTCLDEKPARTGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGMDDDR
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2257 | GenBank | NZ_JAIEUG010000005 |
| Plasmid name | pECC30-4 | Incompatibility group | Col440II |
| Plasmid size | 6365 bp | Coordinate of oriT [Strand] | 1178..1237 [+] |
| Host baterium | Enterobacter hormaechei strain ECC30 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |