Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101808
Name   oriT_p2C45 in_silico
Organism   Clostridium perfringens strain 2C45
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JAAQTM010000004 (100249..100453 [-], 205 nt)
oriT length   205 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 205 nt

>oriT_p2C45
GGTGTTGGAAAAATAGGAAATATTATGGTTTCTTGTATAAATGCTAAAAATCAAGTCTTATTTCACTTAGGGTATGAATTTGGAGAAAGTGATATTCATGATGTAAAATTATTATGTAAAGAATTTAACATTCCGATACCTAAAGAATATGAAAATTTTTAAATTAGCGATAAATTATAATCTTTAGATTTAATAATATTACTAT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


T4CP

ID   1190 GenBank   WP_173705955
Name   t4cp2_HBF21_RS14560_p2C45 insolico UniProt ID   _
Length   1045 a.a. PDB ID   _
Note   Predicted by oriTfinder 2.0

  T4CP protein sequence


Download         Length: 1045 a.a.        Molecular weight: 120381.71 Da        Isoelectric Point: 5.8215

>WP_173705955.1 VirD4-like conjugal transfer protein, CD1115 family [Clostridium perfringens]
MEQKEEKKEKKRLNFNFKLFKQKVNIIFNELKPLLKNPKVWIAVFIIWYIESPIMVMINKGFFNVSLISL
YLNPFKLAFEFITCLGVIWTFIKFNSSIFFIFIIICLVMHLLGIETEKLIDIKKILLLKDYIGEKEGEFE
YAKSGEYGTAKWATLKSIEKANRDNLNSHADPYVAITSKGDDGLLFGYWMNPNGTNSRKIITLPKKTSLN
RNVAVFGSSGSMKSRSFVIPNILNLIKNNESLFVTDPKGELLAKTYDVLIANGYTVKAFNINNIPCSDRW
NVLQEIKDEQTASIFAKSIIENTKDRGEKGDSFWDNHYVNFLKAIALYVRYTEKEENQNMAKVYEYITYE
EGLEGLKALFDKIDNTHPAKQAWITFNTATGNEKVAAGVISGLSIKLDTLQIPSFRDLLSGNDIDLTAPG
REKCAYFVVVPDTHATFNFLAGLFFTFAFINLIDFADKLGDALPYHVNFLLDEFPNIAKIPDFEKKISTV
RSRGVSICVIFQTLLQLESRYSKEVASEILGNCDSKVFLGANEIDTATYISKMLDDTTIKVKTTIKGAYS
FFDDKVSTGVAKRELKKPGEVLKKPRTQSYVLLSGLDPIKALKMDYTKHSMGNEVKEHYIYDMLKPWSSK
YHEKYLEEMCKQLRKAINKVDSVKNSDSEVKSILNNIVLENETIISDEKEKITESIKNIQNQSLNNSSEN
KFRIRKRTEEDSTKEQIALNMKELISIQDDDINKKLEKLENTLMILEDKLKEIRKKKEIYQEEKSSKILE
LKTELNNINQINELMPLDEEVTNLINDTTTTEDQLFNLRELKSSIAAKREELIKINKDKLNNKFKQQIGN
IKVILENSNITTEELEKARYKLNECRLFAEENNLQEIQLEKINELDALRDKLSEELYQKNLKENSLINEE
DSWADEYIDNEYIDIDDAYVEINNIIDNNENQGPIVNDCLTIEEIEKNELKDLEEESININKVKEKTLEN
EPKNNQKQKNDGNVKKINGNNTKKCENNTKVLYNKNEKINKTFKNNSKNNFKSSKKSSSTIELDI

  Protein domains


Predicted by InterproScan.

Type IV secretory system Conjugative DNA transfer (T4SS-DNA_transf)

(180-611)

  Protein structure



No available structure.




Host bacterium

ID   2252 GenBank   NZ_JAAQTM010000004
Plasmid name   p2C45 Incompatibility group   -
Plasmid size   148618 bp Coordinate of oriT [Strand]   100249..100453 [-]
Host baterium   Clostridium perfringens strain 2C45

Cargo genes

Drug resistance gene   lnu(P), erm(A), optrA, fexA
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -