Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101805 |
| Name | oriT_CF3W|unnamed4  |
| Organism | Enterobacter hormaechei strain CF3W |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JACGGA010000023 (4019..4078 [-], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_CF3W|unnamed4
GGGTTTCGGGGCGCAGCCCTGAACCAGTCAAGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCAAGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1511 | GenBank | WP_205920559 |
| Name | Relaxase_H4F72_RS23040_CF3W|unnamed4 |
UniProt ID | _ |
| Length | 153 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 153 a.a. Molecular weight: 17413.79 Da Isoelectric Point: 6.2541
>WP_205920559.1 relaxase/mobilization nuclease domain-containing protein, partial [Enterobacter hormaechei]
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRLRIDAWQTIVN
GRLELHDPNAPEN
MIVKFHPRGRGGGAGPVDYLLGKDRQREGASVLQGKPEEVRELIDASPYVKKYTSGVLSFAEADLPPGQR
EKLMASFERVLMPGLDKDQYSILWVEHEDKGRLELNFLIPNTELLTGRRLQPYYDRADRLRIDAWQTIVN
GRLELHDPNAPEN
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 605 | GenBank | WP_007772081 |
| Name | WP_007772081_CF3W|unnamed4 |
UniProt ID | I7A6Y6 |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11885.64 Da Isoelectric Point: 8.5732
>WP_007772081.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Bacteria]
MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARSGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
MLTMWVTEDEHRRLLERCDGRQLAAWMRQTCLDEKPARSGKLPSISPALLRQLAGMGNNLNQIARRVNAG
GGTGHDRVQIVAALMAIDAGLERLRHAVLEKGTDDDR
Protein domains
Predicted by InterproScan.
Protein structure
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | I7A6Y6 |
Host bacterium
| ID | 2249 | GenBank | NZ_JACGGA010000023 |
| Plasmid name | CF3W|unnamed4 | Incompatibility group | ColRNAI |
| Plasmid size | 4962 bp | Coordinate of oriT [Strand] | 4019..4078 [-] |
| Host baterium | Enterobacter hormaechei strain CF3W |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |