Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101798
Name   oriT_70dps-OG12|pAQU-like in_silico
Organism   Photobacterium damselae subsp. damselae strain 70dps-OG12
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_VANF01000001 (3297..3334 [-], 38 nt)
oriT length   38 nt
IRs (inverted repeats)      9..15, 19..25  (ACTTTAC..GTAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 38 nt

>oriT_70dps-OG12|pAQU-like
GGTCACGTACTTTACGGAGTAAAGTCTAGTGAGTATAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1506 GenBank   WP_000852935
Name   mobV_FD720_RS00030_70dps-OG12|pAQU-like insolico UniProt ID   A0A1P8DQM6
Length   328 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 328 a.a.        Molecular weight: 37183.00 Da        Isoelectric Point: 10.4191

>WP_000852935.1 MULTISPECIES: MobV family relaxase [Bacteria]
MAFAIMRAKKLNSMGTVAAALQHCYRDRETPNADQERTPDNDHLAARSTDEAMGKLRERLPEKRRKDAVL
AVEYVMSASPEWWQTASADQQREFFKRSTEWLADKYGAENVVTATIHRDELTPHLSAFVVPRTADGRLSA
KEFIGNRTKMSQDQTSYAERVADLGLERGIEGSRATHQRVKTHYGAIQQAGRDVPHLTPDELKPQKVKGV
SLAEKVFGAVETVEGVAQRLNAKIMGSVQPMAEKAAVSAQNERRAKELRETLAQQQKRLQALQEPFKGLS
KDQVAGLIRQAVKLRQENEQEKQERAQQIKERFKAKRERERSDRSRGR

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-183)


  Protein structure


Source ID Structure
AlphaFold DB A0A1P8DQM6


Host bacterium

ID   2242 GenBank   NZ_VANF01000001
Plasmid name   70dps-OG12|pAQU-like Incompatibility group   -
Plasmid size   4237 bp Coordinate of oriT [Strand]   3297..3334 [-]
Host baterium   Photobacterium damselae subsp. damselae strain 70dps-OG12

Cargo genes

Drug resistance gene   sul2
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -