Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101765
Name   oriT_pRHBSTW-00142_6 in_silico
Organism   Citrobacter freundii strain RHBSTW-00142
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JABXRD010000006 (3850..3892 [-], 43 nt)
oriT length   43 nt
IRs (inverted repeats)      7..13, 25..31  (CGTTTCT..AGAAACG)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 43 nt

>oriT_pRHBSTW-00142_6
GCGCACCGTTTCTGAACGAAGTGAAGAAACGTCTAAGTGCGCC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1485 GenBank   WP_182321305
Name   mobA_HV096_RS26845_pRHBSTW-00142_6 insolico UniProt ID   _
Length   365 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 365 a.a.        Molecular weight: 42188.64 Da        Isoelectric Point: 6.4557

>WP_182321305.1 MULTISPECIES: mobilization protein MobA [Enterobacterales]
MASYHLSVKTGGKGSASPHADYISREGKYAREKDSDLEHKESGNMPAWAAHKPSEFWKAADTSERANGCT
YREIEIALPRELKPEQRLELVRDFVRQEIGDRHAYQFAIHNPKAAIAGGEQPHAHIMFSERMNDGIDRDP
QQYFKRANSKAPERGGAKKARFGETPTERKEHLVAQRERWADLQNKHLERYQHTDRVDARSLKAQGIERE
PERHLGAGQVQRFDTAQLQAILERRDAERQAEQSRDERDSVIDVTTSLREAISERDNLTIKQEQKPEPAQ
EDTSGRVFDFEKEPEKLNARVSDAMKDIQEEIDLQSLVNDAMAEFQGIHQEMERLAEKQRQQEKEQQRLA
EQTRQKPDKGWSFSR

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(42-218)


  Protein structure



No available structure.




Host bacterium

ID   2209 GenBank   NZ_JABXRD010000006
Plasmid name   pRHBSTW-00142_6 Incompatibility group   -
Plasmid size   21754 bp Coordinate of oriT [Strand]   3850..3892 [-]
Host baterium   Citrobacter freundii strain RHBSTW-00142

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -