Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101746 |
| Name | oriT_pRHBSTW-00189_12  |
| Organism | Klebsiella grimontii strain RHBSTW-00189 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JABXQY010000012 (2171..2348 [-], 178 nt) |
| oriT length | 178 nt |
| IRs (inverted repeats) | 100..105, 110..115 (ACCCCC..GGGGGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 178 nt
>oriT_pRHBSTW-00189_12
GGTTATAACAGTACTATAAGTAGTTGTTTCAACCCGTCTTTTTGGGTGGAACAACAAGGCATTTTAGGGATAGAGCAAAGCGAAGGCCATAAAATTGCCACCCCCAACCGGGGGTCGTTGTTCGATTTGAGCGATAGCGAAAAATTGAACATAAGGGGGGAGGGTTTGGGTTTTACGG
GGTTATAACAGTACTATAAGTAGTTGTTTCAACCCGTCTTTTTGGGTGGAACAACAAGGCATTTTAGGGATAGAGCAAAGCGAAGGCCATAAAATTGCCACCCCCAACCGGGGGTCGTTGTTCGATTTGAGCGATAGCGAAAAATTGAACATAAGGGGGGAGGGTTTGGGTTTTACGG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2190 | GenBank | NZ_JABXQY010000012 |
| Plasmid name | pRHBSTW-00189_12 | Incompatibility group | Col |
| Plasmid size | 2348 bp | Coordinate of oriT [Strand] | 2171..2348 [-] |
| Host baterium | Klebsiella grimontii strain RHBSTW-00189 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |