Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101740 |
| Name | oriT_pRHBSTW-00465_8  |
| Organism | Klebsiella sp. RHBSTW-00465 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JABXPX010000008 (1118..1177 [+], 60 nt) |
| oriT length | 60 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 60 nt
>oriT_pRHBSTW-00465_8
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
GGGTTTCGGGGCGCAGCCCTGAACCAGTCACGTAGCGCTAGCGGAGTGTATACTGGCTTA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1472 | GenBank | WP_249424077 |
| Name | Relaxase_HV205_RS31890_pRHBSTW-00465_8 |
UniProt ID | _ |
| Length | 505 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 505 a.a. Molecular weight: 56266.50 Da Isoelectric Point: 7.3520
>WP_249424077.1 relaxase/mobilization nuclease domain-containing protein [Klebsiella sp. RHBSTW-00465]
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLSGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGIERKREENQRR
HPRPRQEAVRCHEPAHERYAAYGQPDVADHRPGFRAADRLERGHSVVAGAADARQLHEHPGAEGRAGEAE
CENVWREFPERQQRAVSGTAERRQGRNELDGGQREAERRETGTGVEQHDGTGKTVAERIRAATAGLLEKA
GRVGERLRGMADDVWSYATGERGAERARFELEQAGAEFERSAAPVVERLKSIEAHRQQERAAQHQKALEL
DLSQRQKTYDGPSLG
MIVKFHPRGRGGGAGPVDYLLGKDRQRDGATVLQGKPEEVRELIDASPYVKKYTSGVLSFAEQDLPPGQR
EKLMASFERVLMPGLDKDQYSVLWVEHQDKGRLELNFLIPNTELLSGRRLQPYYDRADRPRIDAWQTIVN
GRLGLHDPNAPENRRALVTPSALPEAKQEAAQAITRGLLALASSGELKTRQDVTEALESAGFEVVRTTKS
SISIADPDGGRNIRLKGAIYEQSFNAGEGLRAEIESAAAEYRRDAESRIQRAREVCQSGIERKREENQRR
HPRPRQEAVRCHEPAHERYAAYGQPDVADHRPGFRAADRLERGHSVVAGAADARQLHEHPGAEGRAGEAE
CENVWREFPERQQRAVSGTAERRQGRNELDGGQREAERRETGTGVEQHDGTGKTVAERIRAATAGLLEKA
GRVGERLRGMADDVWSYATGERGAERARFELEQAGAEFERSAAPVVERLKSIEAHRQQERAAQHQKALEL
DLSQRQKTYDGPSLG
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Auxiliary protein
| ID | 588 | GenBank | WP_182207764 |
| Name | WP_182207764_pRHBSTW-00465_8 |
UniProt ID | _ |
| Length | 107 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
Auxiliary protein sequence
Download Length: 107 a.a. Molecular weight: 11697.42 Da Isoelectric Point: 6.8524
>WP_182207764.1 MULTISPECIES: MobC family plasmid mobilization relaxosome protein [Enterobacteriaceae]
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPAHAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQIVAALMAIDAGLERLRHAVLEKGADDDC
MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPAHAGKLPSISPALLRQLAGMGNNLNQIARQVNAG
GGSGHDRVQIVAALMAIDAGLERLRHAVLEKGADDDC
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 2184 | GenBank | NZ_JABXPX010000008 |
| Plasmid name | pRHBSTW-00465_8 | Incompatibility group | Col440II |
| Plasmid size | 5058 bp | Coordinate of oriT [Strand] | 1118..1177 [+] |
| Host baterium | Klebsiella sp. RHBSTW-00465 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |