Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   101691
Name   oriT_EPA336|unnamed in_silico
Organism   Escherichia coli strain EPA336
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_SJTB01000019 (6994..7053 [+], 60 nt)
oriT length   60 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 60 nt

>oriT_EPA336|unnamed
GGGTTTCGGGGCGCAGCCCTGAACCAGTCATGTAGCGCTAGCGGAGTGTATACTGGCTTA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   2135 GenBank   NZ_SJTB01000019
Plasmid name   EPA336|unnamed Incompatibility group   ColRNAI
Plasmid size   8379 bp Coordinate of oriT [Strand]   6994..7053 [+]
Host baterium   Escherichia coli strain EPA336

Cargo genes


Drug resistance gene   aph(3'')-Ib, aph(6)-Id, tet(A)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -