Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101671
Name   oriT_pA2sk2_2 in_silico
Organism   Escherichia coli strain CPE3
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JACYGM010000006 (3864..4041 [+], 178 nt)
oriT length   178 nt
IRs (inverted repeats)      104..109, 123..128  (ACAATC..GATTGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 178 nt

>oriT_pA2sk2_2
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCGCGACAAATCACAAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACTACAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1446 GenBank   WP_001029353
Name   mobQ_IYX66_RS25365_pA2sk2_2 insolico UniProt ID   Q2MKP4
Length   719 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 719 a.a.        Molecular weight: 81704.14 Da        Isoelectric Point: 8.1853

>WP_001029353.1 MULTISPECIES: MobQ family relaxase [Bacteria]
MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAECRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSLSQQMEKLRQHYRKVEKQDIPASQTAFEKQWQQWGASGLAALRVQLLKREEELRRKEQEDTERSRAE
RRAEQLRKNDNAVMDSGVLSAVVTGYGEAPMPGNGEMTCYLLLHNRNGEYTLWGNELEKYRTRIFERVDL
MRDRSGYICDRSEIGQHPPLQRVYSSATFEQLLTQVCQTWPQYTRNLRQPKTWPESFCLGEDRQPAMPSL
AARKVDFTQGRLLPTLMPVMSSVDRETRQLQLLLVMGVDDSLGGVVRLNGTLYPAFAVPSADNSQLVISA
LTDKGLRYAGYGVAVNHDADSHISPAPELMEFHLKTREAPLFAAVNTPEKQPDHLFRSLGFNRTWDEWRR
EEDARTHTTERRHDRGWSQ

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure


Source ID Structure
AlphaFold DB Q2MKP4


Host bacterium

ID   2115 GenBank   NZ_JACYGM010000006
Plasmid name   pA2sk2_2 Incompatibility group   Col8282
Plasmid size   4072 bp Coordinate of oriT [Strand]   3864..4041 [+]
Host baterium   Escherichia coli strain CPE3

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -