Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101644 |
| Name | oriT_pUSA04  |
| Organism | Staphylococcus aureus strain BSN38-MRSA4 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JBAMAQ010000013 (26654..26893 [-], 240 nt) |
| oriT length | 240 nt |
| IRs (inverted repeats) | 217..222, 232..237 (ATTTTA..TAAAAT) 171..178, 183..190 (CTATCATT..AATGATAG) 155..160, 164..169 (TCTGGC..GCCAGA) 26..32, 44..50 (TTTTTTA..TAAAAAA) 1..7, 20..26 (AAGACAT..ATGTCTT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 240 nt
>oriT_pUSA04
AAGACATTAGTGATAACTGATGTCTTTTTTTATTGTTTTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTC
AAGACATTAGTGATAACTGATGTCTTTTTTTATTGTTTTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTC
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 2088 | GenBank | NZ_JBAMAQ010000013 |
| Plasmid name | pUSA04 | Incompatibility group | - |
| Plasmid size | 27038 bp | Coordinate of oriT [Strand] | 26654..26893 [-] |
| Host baterium | Staphylococcus aureus strain BSN38-MRSA4 |
Cargo genes
| Drug resistance gene | mph(C), msr(A), aph(3')-III, blaZ |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |