Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   101629
Name   oriT_aEPEC 3991-1/90|unnamed3 in_silico
Organism   Escherichia coli strain aEPEC 3991-1/90
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JAXUFV010000131 (108..180 [+], 73 nt)
oriT length   73 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 73 nt

>oriT_aEPEC 3991-1/90|unnamed3
GTCGGGGTGAAGCCCTGACCAAGTGGGGAATGTCTGAGTGCGCGTGCGCGGTCCGACATTCCCACATCCTGTC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   2073 GenBank   NZ_JAXUFV010000131
Plasmid name   aEPEC 3991-1/90|unnamed3 Incompatibility group   Col
Plasmid size   1780 bp Coordinate of oriT [Strand]   108..180 [+]
Host baterium   Escherichia coli strain aEPEC 3991-1/90

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -