Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101538
Name   oriT_pB52y in_silico
Organism   Bacillus licheniformis CG-B52
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_AVEZ01000046 (4869..4908 [+], 40 nt)
oriT length   40 nt
IRs (inverted repeats)      2..8, 12..18  (ACTTTAC..GTAAAGT)
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 40 nt

>oriT_pB52y
CACTTTACGGAGTAAAGTATAGCGGGCTATACTTTACATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1364 GenBank   WP_021838019
Name   mobV_N399_RS21545_pB52y insolico UniProt ID   _
Length   394 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 394 a.a.        Molecular weight: 46502.30 Da        Isoelectric Point: 9.7699

>WP_021838019.1 MULTISPECIES: MobV family relaxase [Bacillus subtilis group]
MSYIICNMRKFKNADLKGLQIHNQREKESHTNPDIDESRTKLNYDLLHQQMIDYKAIINEHISKNVETKR
AIRKDAVRCCSFMISASPEFFEGLSPEREKAFFQSNLAFLQERYGKENVMYAAVHKDEKTPHMHVGVVPI
TKEKKLSAKQIFNKVEMKQLQEAIGRHNEKWGLLRGEPSDKKYLEMNEFKREALKQEIKELEIQKAEHEQ
ASKQIEERLEDLKETAYKAGAVDRIEVKESGFLSSKSVKMSKEDYEQLKSLARSADVLRKENELLKDENR
LERARSEELKKTKDRLNKEKAVLKQENQELKTENLFLKRAINKFIETFKDRKQEMALNLGYVKAYILQKM
KMPLYRRFFGSELEEKGAANFLNDEKQNEAKRSKRRDHGMDMER

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(1-190)


  Protein structure



No available structure.




Host bacterium

ID   1982 GenBank   NZ_AVEZ01000046
Plasmid name   pB52y Incompatibility group   Col
Plasmid size   6283 bp Coordinate of oriT [Strand]   4869..4908 [+]
Host baterium   Bacillus licheniformis CG-B52

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -