Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 101522
• Name: oriT_pRCAD0338PM-1
• Organism: Pasteurella multocida strain GH161213
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_SHNK01000004 (1588..1616 [-], 29 nt)
• oriT length: 29 nt
• IRs (inverted repeats): 2..10, 14..22 (CAGTTTCTC..GAGAAACTG)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 29 nt

>oriT_pRCAD0338PM-1
CCAGTTTCTCGCAGAGAAACTGATAAGTG

oriT secondary structure

Predicted by RNAfold.

Relaxase

MobA_MobL_EGB40_RS02735_pRCAD0338PM-1

• ID: 1355
• GenBank: WP_160151381
• Name: MobA_MobL_EGB40_RS02735_pRCAD0338PM-1
• UniProt ID: _
• Length: 450 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 450 a.a.
• Molecular weight: 53610.88 Da
• Isoelectric Point: 8.4078

>WP_160151381.1 MULTISPECIES: MobA/MobL family protein [Gammaproteobacteria]
MAIYHLNVRYCSKSKGQSAQAKNEYINRNDKYSKRLDDLQFSGFGNMPKFAENNPQKFWQASDIYERANA
RVCTEIVFALPRELNLEQQQELVQSFINSTVNSERNKLPYSFAIHNDKANNNPHCHLIFSERQLDGIERS
EEQFFKRANSKNAELGGTKKTADFRDRDFIKAVRKTWSEQANFALEKHGHTARIDERSYQEQGIDKEPRA
RLDRVTWQELQRLEENAEFFAEVIERKQNQIEQEKVEITKNTPKNTLEPFSQKDDIKHEQIKKVAENRKE
SVSQAEFDRFLIENWLEPNQKFINACEKRAKMRSEWEQYGKDLERINSDYKALNEKKQGLFGLWETKEQK
QTKQELESEYYRIKALRKEKAEEHDTYNDKINQYEKDTIEPLRKQIEQMKADNPHLEQRNHQQLMAMKFK
GLEQWAKDKLQREQSQKRQISHSKDSDLSL

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (21-211)

Protein structure

No available structure.

Host bacterium

• ID: 1966
• GenBank: NZ_SHNK01000004
• Plasmid name: pRCAD0338PM-1
• Incompatibility group: -
• Plasmid size: 6582 bp
• Coordinate of oriT [Strand]: 1588..1616 [-]
• Host baterium: Pasteurella multocida strain GH161213

Cargo genes

• Drug resistance gene: floR
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -