Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 101428
• Name: oriT_EPA165|unnamed
• Organism: Escherichia coli strain EPA165
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_SJTD01000038 (746..923 [-], 178 nt)
• oriT length: 178 nt
• IRs (inverted repeats): 104..109, 123..128 (ACAATC..GATTGT)
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 178 nt

>oriT_EPA165|unnamed
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGCAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACTACAAAAAGGCATTACGGCAGAA

oriT secondary structure

Predicted by RNAfold.

Relaxase

mobQ_E0D72_RS24750_EPA165|unnamed

• ID: 1296
• GenBank: WP_165530470
• Name: mobQ_E0D72_RS24750_EPA165|unnamed
• UniProt ID: _
• Length: 248 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 248 a.a.
• Molecular weight: 27731.18 Da
• Isoelectric Point: 8.0043

>WP_165530470.1 MobQ family relaxase, partial [Escherichia coli]
MAIYHLSMKIISRSSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEP

Protein domains

Predicted by InterproScan.

• MobA/MobL family (MobA_MobL) (18-151)

• MobA/MobL family (MobA_MobL) (152-213)

Protein structure

No available structure.

Host bacterium

• ID: 1872
• GenBank: NZ_SJTD01000038
• Plasmid name: EPA165|unnamed
• Incompatibility group: Col8282
• Plasmid size: 4074 bp
• Coordinate of oriT [Strand]: 746..923 [-]
• Host baterium: Escherichia coli strain EPA165

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -