Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 101403 |
Name | oriT_pK020_2 |
Organism | Klebsiella pneumoniae strain 20 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_SBIL01000004 (111199..111248 [+], 50 nt) |
oriT length | 50 nt |
IRs (inverted repeats) | 7..14, 17..24 (GCAAAATT..AATTTTGC) |
Location of nic site | 33..34 |
Conserved sequence flanking the nic site |
GGTGTGGTGA |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 50 nt
>oriT_pK020_2
AAATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGTGATTTTGTGGTGAG
AAATCTGCAAAATTTTAATTTTGCGTGGGGTGTGGTGATTTTGTGGTGAG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileRelaxase
ID | 1284 | GenBank | WP_004153015 |
Name | traI_EJB37_RS27920_pK020_2 | UniProt ID | A0A8A5TN24 |
Length | 1753 a.a. | PDB ID | |
Note | Predicted by oriTfinder 2.0 |
Relaxase protein sequence
Download Length: 1753 a.a. Molecular weight: 190492.51 Da Isoelectric Point: 6.3661
>WP_004153015.1 MULTISPECIES: conjugative transfer relaxase/helicase TraI [Enterobacterales]
MMSIGSVKSAGSAGNYYTDKDNYYVIGSMDERWQGKGAEALGIDGKAVDKALFTELLKGKLPDGSDLTRI
QDGANKHRPGYDLTFSAPKSVSVMAMLGGDKRLIDAHNQAVTEAVRQLETLAATRVMTDGKSETVLTGNL
IVAKFNHDTNRNQEPQIHTHAVVINATQNGDKWQSLGTDKIGKTGFIENVYANQIAFGKLYREAFKPLVE
KLGYETEVVGKHGMWEMKGVPVEPFSTRSQEVREAAGPDASLKSRDVAALDTRKSKEAIDPAEKMVEWMN
TLKETGFDIRGYREAADARAAELARAPAAPVNTDGPDITDVVTKAIAGLSDRKVQFTYADLLARTVGQLE
AKDGMFELARKGIDAAIEREQLIPLDREKGLFTSNIHVLDELAVKALSQEVQRHNHVSVTPDASVVRQVP
FSDAVSVLAQDRPVMGIVSGQGGASGQRERVAELTLMAREQGRDVHILAADNRSRDFLAGDVRLAGETVT
GKSALQDGTAFIPGGTLIVDQAEKLSLKETISLLDGAMRHNVQVLLSDSGKRSGTGSALTVLKDSGVNTY
RWQGGHQTTADIISEPDKGARYSRLAQEFAVSVREGQKSVAQISGTREQSVLNGLIRDSLRQEGVLGEKD
TTITALTPVWLDSKSRGVRDYYREGMVMERWDPETRTHDRFVIDRVTASSNMLTLKDREGGRLDLKVSAV
DSQWTLFRAETLPVAEGERLAVLGKIPDTRLKGGESITVMKVEEGQLTVQRPGQKTTQTLAVGAGVFDGI
KIGHGWVESPGRSVSETATVFASVTQRELDNATLNQLAQSGSHLRLYSAQDAARTTEKLSRHTSFSVVSE
QLKTRSGETDLDAAIAQQKAGLRTPAEQAIHLAIPLLESEKLTFSRPQLLATALETGGGKVPMADIDTTI
QTQIRSGQLLNAPVAHGYGNDLLISRQTWDAEKSILTHVLEGKGAVAPLMDRVPASLMTDLTAGQRAATR
MILESTDRFTVVQGYAGVGKTTQFRAVMSAISLLPEETRPRVIGLAPTHRAVGEMQSAGVEARTTASFLH
DTQLLQRNGQTPDFSNTLFLLDESSMVGLADMAKAHSLIVAGGGRAVSSGDNDQLQPIAPGQPFRLMQQR
SAADVAIMKEIVRQVPELRPAVYSLIERDVHRALTTIEQVTPEQVPRKEGVWAPGSSVVEFTQAQEKAIQ
KALSEGETLPAGQPASLYEALVKDYTGRTPEAQSQTLVITHLNKDRRALNSLIHDARRENGETGKEEITL
PVLVTSNIRDGELRKLSTWTAHKEAVALVDNVYHRISKVDKDNQLITLTDSEGKERFISPREASAEGVTL
YRQEKITVSQGDRMRFSKSDPERGYVANSIWEVQSVSGDSVTLSDGKLTRTLTPKADQAQQHIDLAYAIT
AHGAQGASEPYAIALEGVAGGREQMASFESAYVALSRMKQHVQVYTDSREGWIKAIQHSPEKATAHDILE
PRNDRAVKSADLLFGRARPLDETAAGRAALQQSGLAQGSSPGKFISPGKKYPQPHVALPAFDKNGKAAGI
WLSPLTDRDGRLEAIGGEGRIMGNEDARFVALQNSRNGESLLAGNMGEGVRMARDNPDTGVVVRLAGDDR
PWNPGAMTGGRVWAEPAPVAPVPQAGADIILPPEVLAQRAAEEQQRREMEKQAEQTAREVAGEARKAGEP
ADRVKEVIGDVIRGLERDRPGTEKTTLPDDPQFRRQEAAIQQVASESLQRERLQAVERDMVRDLNREKTL
GGD
MMSIGSVKSAGSAGNYYTDKDNYYVIGSMDERWQGKGAEALGIDGKAVDKALFTELLKGKLPDGSDLTRI
QDGANKHRPGYDLTFSAPKSVSVMAMLGGDKRLIDAHNQAVTEAVRQLETLAATRVMTDGKSETVLTGNL
IVAKFNHDTNRNQEPQIHTHAVVINATQNGDKWQSLGTDKIGKTGFIENVYANQIAFGKLYREAFKPLVE
KLGYETEVVGKHGMWEMKGVPVEPFSTRSQEVREAAGPDASLKSRDVAALDTRKSKEAIDPAEKMVEWMN
TLKETGFDIRGYREAADARAAELARAPAAPVNTDGPDITDVVTKAIAGLSDRKVQFTYADLLARTVGQLE
AKDGMFELARKGIDAAIEREQLIPLDREKGLFTSNIHVLDELAVKALSQEVQRHNHVSVTPDASVVRQVP
FSDAVSVLAQDRPVMGIVSGQGGASGQRERVAELTLMAREQGRDVHILAADNRSRDFLAGDVRLAGETVT
GKSALQDGTAFIPGGTLIVDQAEKLSLKETISLLDGAMRHNVQVLLSDSGKRSGTGSALTVLKDSGVNTY
RWQGGHQTTADIISEPDKGARYSRLAQEFAVSVREGQKSVAQISGTREQSVLNGLIRDSLRQEGVLGEKD
TTITALTPVWLDSKSRGVRDYYREGMVMERWDPETRTHDRFVIDRVTASSNMLTLKDREGGRLDLKVSAV
DSQWTLFRAETLPVAEGERLAVLGKIPDTRLKGGESITVMKVEEGQLTVQRPGQKTTQTLAVGAGVFDGI
KIGHGWVESPGRSVSETATVFASVTQRELDNATLNQLAQSGSHLRLYSAQDAARTTEKLSRHTSFSVVSE
QLKTRSGETDLDAAIAQQKAGLRTPAEQAIHLAIPLLESEKLTFSRPQLLATALETGGGKVPMADIDTTI
QTQIRSGQLLNAPVAHGYGNDLLISRQTWDAEKSILTHVLEGKGAVAPLMDRVPASLMTDLTAGQRAATR
MILESTDRFTVVQGYAGVGKTTQFRAVMSAISLLPEETRPRVIGLAPTHRAVGEMQSAGVEARTTASFLH
DTQLLQRNGQTPDFSNTLFLLDESSMVGLADMAKAHSLIVAGGGRAVSSGDNDQLQPIAPGQPFRLMQQR
SAADVAIMKEIVRQVPELRPAVYSLIERDVHRALTTIEQVTPEQVPRKEGVWAPGSSVVEFTQAQEKAIQ
KALSEGETLPAGQPASLYEALVKDYTGRTPEAQSQTLVITHLNKDRRALNSLIHDARRENGETGKEEITL
PVLVTSNIRDGELRKLSTWTAHKEAVALVDNVYHRISKVDKDNQLITLTDSEGKERFISPREASAEGVTL
YRQEKITVSQGDRMRFSKSDPERGYVANSIWEVQSVSGDSVTLSDGKLTRTLTPKADQAQQHIDLAYAIT
AHGAQGASEPYAIALEGVAGGREQMASFESAYVALSRMKQHVQVYTDSREGWIKAIQHSPEKATAHDILE
PRNDRAVKSADLLFGRARPLDETAAGRAALQQSGLAQGSSPGKFISPGKKYPQPHVALPAFDKNGKAAGI
WLSPLTDRDGRLEAIGGEGRIMGNEDARFVALQNSRNGESLLAGNMGEGVRMARDNPDTGVVVRLAGDDR
PWNPGAMTGGRVWAEPAPVAPVPQAGADIILPPEVLAQRAAEEQQRREMEKQAEQTAREVAGEARKAGEP
ADRVKEVIGDVIRGLERDRPGTEKTTLPDDPQFRRQEAAIQQVASESLQRERLQAVERDMVRDLNREKTL
GGD
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
ID | 897 | GenBank | WP_004152620 |
Name | traD_EJB37_RS27925_pK020_2 | UniProt ID | _ |
Length | 770 a.a. | PDB ID | _ |
Note | Predicted by oriTfinder 2.0 |
T4CP protein sequence
Download Length: 770 a.a. Molecular weight: 85871.84 Da Isoelectric Point: 5.0101
>WP_004152620.1 MULTISPECIES: type IV conjugative transfer system coupling protein TraD [Enterobacterales]
MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMR
DIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTGFAFAAVVSLVICIVTFFIASWVLGRQGKQ
QSEDENTGGRQLSDKPKEVARQMKRDGVASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVR
ARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQG
SGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEKIEKTAISIRAVLTNYVKA
IRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIA
EFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL
KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDTPEPGPADTDSHASEQPEPVSPPA
PAVMTVTPAPVKSPPTTKRPAAEPSVRATEPPVLRGTTVPLIKPKAAAAATAASTASSAGAPAAAAGGTE
QELAQQSAEQGQDMLPAGMNEDGVIEDMQAYDAWLADEQTQRDMQRREEVNINHSHRHDEQDDVEIGGNF
MSFNAKDMTQGGQIANMRFRMFGQIANIIFYVLFILFWVLCGLMLMYRLSWQTFVNGCVYWWCTTLGPMR
DIIRSQPVYTIQYYGQSLEYTSEQILADKYTIWCGEQLWTGFAFAAVVSLVICIVTFFIASWVLGRQGKQ
QSEDENTGGRQLSDKPKEVARQMKRDGVASDIKIGDLPILKNSEIQNFCLHGTVGSGKSEVIRRLLNYVR
ARGDMAIIYDRSCEFVKSYYDPSLDKILNPLDSRCAAWDLWKECLTLPDFDNISNTLIPMGTKEDPFWQG
SGRTIFAEGAYLMREDDDRSYEKLVDTMLSIKIDKLRAYLQNTPAANLVEEKIEKTAISIRAVLTNYVKA
IRYLQGIEKNGEPFTIRDWMRGVREDRPNGWLFISSNADTHASLKPVISMWLSIAIRGLLAMGENRNRRV
WIFADELPTLHKLPDLVEILPEARKFGGCYVFGIQSYAQLEDIYGVKPAATLFDVMNTRAFFRSPSKEIA
EFAAGEIGEKEILKASEQYSYGADPVRDGVSTGKEKERETLVSYSDIQTLPDLSCYVTLPGPYPAVKLAL
KYKPRPKIAEGFIPRTLDARVDARLSALLEAREAEGSLARALFTPDTPEPGPADTDSHASEQPEPVSPPA
PAVMTVTPAPVKSPPTTKRPAAEPSVRATEPPVLRGTTVPLIKPKAAAAATAASTASSAGAPAAAAGGTE
QELAQQSAEQGQDMLPAGMNEDGVIEDMQAYDAWLADEQTQRDMQRREEVNINHSHRHDEQDDVEIGGNF
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4SS
T4SS were predicted by using oriTfinder2.
Region 1: 82809..111806
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
EJB37_RS27925 (EJB37_28125) | 82809..85121 | - | 2313 | WP_004152620 | type IV conjugative transfer system coupling protein TraD | virb4 |
EJB37_RS27930 | 85250..85939 | - | 690 | WP_004198206 | hypothetical protein | - |
EJB37_RS27935 (EJB37_28135) | 86131..86862 | - | 732 | WP_004152622 | conjugal transfer complement resistance protein TraT | - |
EJB37_RS27940 (EJB37_28140) | 87046..87594 | - | 549 | WP_004152623 | conjugal transfer entry exclusion protein TraS | - |
EJB37_RS27945 (EJB37_28145) | 87607..90456 | - | 2850 | WP_004152624 | conjugal transfer mating-pair stabilization protein TraG | traG |
EJB37_RS27950 (EJB37_28150) | 90456..91835 | - | 1380 | WP_011977731 | conjugal transfer pilus assembly protein TraH | traH |
EJB37_RS27955 (EJB37_28155) | 91813..92256 | - | 444 | WP_004152679 | F-type conjugal transfer protein TrbF | - |
EJB37_RS27960 (EJB37_28160) | 92302..92859 | - | 558 | WP_013214031 | type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB | traF |
EJB37_RS27965 (EJB37_28165) | 92831..93070 | - | 240 | WP_004144400 | type-F conjugative transfer system pilin chaperone TraQ | - |
EJB37_RS27970 (EJB37_28170) | 93081..93833 | - | 753 | WP_004152686 | type-F conjugative transfer system pilin assembly protein TraF | traF |
EJB37_RS27975 (EJB37_28175) | 93854..94180 | - | 327 | WP_110204385 | hypothetical protein | - |
EJB37_RS27980 (EJB37_28180) | 94193..94441 | - | 249 | WP_004152675 | hypothetical protein | - |
EJB37_RS27985 (EJB37_28185) | 94419..94673 | - | 255 | WP_004152674 | conjugal transfer protein TrbE | - |
EJB37_RS27990 (EJB37_28190) | 94705..96660 | - | 1956 | WP_064162929 | type-F conjugative transfer system mating-pair stabilization protein TraN | traN |
EJB37_RS27995 (EJB37_28195) | 96719..97357 | - | 639 | WP_011977786 | type-F conjugative transfer system pilin assembly protein TrbC | trbC |
EJB37_RS28000 (EJB37_28200) | 97370..98359 | - | 990 | WP_011977785 | conjugal transfer pilus assembly protein TraU | traU |
EJB37_RS28005 (EJB37_28205) | 98356..98745 | - | 390 | WP_004152508 | hypothetical protein | - |
EJB37_RS28010 (EJB37_28210) | 98787..99413 | - | 627 | WP_004152507 | type-F conjugative transfer system protein TraW | traW |
EJB37_RS28015 (EJB37_28215) | 99413..99802 | - | 390 | WP_004152506 | type-F conjugative transfer system protein TrbI | - |
EJB37_RS28020 (EJB37_28220) | 99802..102441 | - | 2640 | WP_004152505 | type IV secretion system protein TraC | virb4 |
EJB37_RS28025 (EJB37_28225) | 102513..102911 | - | 399 | WP_011977783 | hypothetical protein | - |
EJB37_RS28465 (EJB37_28230) | 102919..103308 | - | 390 | WP_004153076 | hypothetical protein | - |
EJB37_RS28040 (EJB37_28235) | 103351..103755 | - | 405 | WP_004152503 | hypothetical protein | - |
EJB37_RS28045 (EJB37_28240) | 103822..104133 | - | 312 | WP_004152502 | hypothetical protein | - |
EJB37_RS28050 (EJB37_28245) | 104134..104352 | - | 219 | WP_004152501 | hypothetical protein | - |
EJB37_RS28055 (EJB37_28250) | 104458..104868 | - | 411 | WP_004152499 | hypothetical protein | - |
EJB37_RS28060 (EJB37_28255) | 105000..105584 | - | 585 | WP_004161368 | type IV conjugative transfer system lipoprotein TraV | traV |
EJB37_RS28065 (EJB37_28260) | 105698..107122 | - | 1425 | WP_004155033 | F-type conjugal transfer pilus assembly protein TraB | traB |
EJB37_RS28070 (EJB37_28265) | 107122..107862 | - | 741 | WP_004152497 | type-F conjugative transfer system secretin TraK | traK |
EJB37_RS28075 (EJB37_28270) | 107849..108415 | - | 567 | WP_004144423 | type IV conjugative transfer system protein TraE | traE |
EJB37_RS28080 (EJB37_28275) | 108435..108740 | - | 306 | WP_004144424 | type IV conjugative transfer system protein TraL | traL |
EJB37_RS28085 (EJB37_28280) | 108754..109122 | - | 369 | WP_004152496 | type IV conjugative transfer system pilin TraA | - |
EJB37_RS28090 (EJB37_28285) | 109176..109562 | - | 387 | WP_004152495 | TraY domain-containing protein | - |
EJB37_RS28095 (EJB37_28290) | 109641..110327 | - | 687 | WP_004152494 | transcriptional regulator TraJ family protein | - |
EJB37_RS28100 (EJB37_28295) | 110501..110899 | - | 399 | WP_004152493 | conjugal transfer relaxosome DNA-binding protein TraM | - |
EJB37_RS28105 (EJB37_28300) | 111321..111806 | + | 486 | WP_001568108 | transglycosylase SLT domain-containing protein | virB1 |
EJB37_RS28110 (EJB37_28305) | 111839..112168 | - | 330 | WP_011977736 | DUF5983 family protein | - |
EJB37_RS28115 (EJB37_28310) | 112201..113022 | - | 822 | WP_004178064 | DUF932 domain-containing protein | - |
EJB37_RS28130 (EJB37_28320) | 113842..114675 | - | 834 | WP_004152751 | N-6 DNA methylase | - |
EJB37_RS28135 (EJB37_28325) | 114726..114872 | - | 147 | WP_004152750 | hypothetical protein | - |
EJB37_RS28140 (EJB37_28330) | 114967..115314 | - | 348 | WP_004152749 | hypothetical protein | - |
EJB37_RS28145 (EJB37_28335) | 115371..115724 | - | 354 | WP_004152748 | hypothetical protein | - |
EJB37_RS28160 (EJB37_28350) | 116354..116704 | - | 351 | WP_004153414 | hypothetical protein | - |
Host bacterium
ID | 1847 | GenBank | NZ_SBIL01000004 |
Plasmid name | pK020_2 | Incompatibility group | IncFIB |
Plasmid size | 135643 bp | Coordinate of oriT [Strand] | 111199..111248 [+] |
Host baterium | Klebsiella pneumoniae strain 20 |
Cargo genes
Drug resistance gene | aac(3)-IId, blaSHV-12 |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | AcrIE9 |