Detailed information of oriT
oriT
The information of the oriT region
oriTDB ID | 101393 |
Name | oriT_Ea77|unnamed06 |
Organism | Klebsiella aerogenes strain Ea77 |
Sequence Completeness | - |
NCBI accession of oriT (coordinates [strand]) | NZ_LYDO01000034 (19078..19182 [-], 105 nt) |
oriT length | 105 nt |
IRs (inverted repeats) | 56..61, 74..79 (TGGAAT..ATTCCA) 46..51, 56..61 (ATTCCA..TGGAAT) 1..6, 8..13 (AATTTG..CAAATT) |
Location of nic site | _ |
Conserved sequence flanking the nic site |
_ |
Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 105 nt
>oriT_Ea77|unnamed06
AATTTGACAAATTCCAAAGATGGGTTAGCCTAGTGACAGAACTAGATTCCAGTATTGGAATAATCAGCTTTAAATTCCAGATAGATAGTTATGTGGATAGGAATT
AATTTGACAAATTCCAAAGATGGGTTAGCCTAGTGACAGAACTAGATTCCAGTATTGGAATAATCAGCTTTAAATTCCAGATAGATAGTTATGTGGATAGGAATT
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure fileHost bacterium
ID | 1837 | GenBank | NZ_LYDO01000034 |
Plasmid name | Ea77|unnamed06 | Incompatibility group | IncA/C2 |
Plasmid size | 40651 bp | Coordinate of oriT [Strand] | 19078..19182 [-] |
Host baterium | Klebsiella aerogenes strain Ea77 |
Cargo genes
Drug resistance gene | - |
Virulence gene | - |
Metal resistance gene | - |
Degradation gene | - |
Symbiosis gene | - |
Anti-CRISPR | - |