Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101332 |
| Name | oriT_pRHB37-C09_28  |
| Organism | Escherichia fergusonii strain RHB37-C09 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JABXSH010000028 (678..961 [+], 284 nt) |
| oriT length | 284 nt |
| IRs (inverted repeats) | 245..250, 253..258 (CGCCCC..GGGGCG) 184..189, 197..202 (ATAAAA..TTTTAT) 130..136, 150..156 (GCGGTGT..ACACCGC) 31..37, 42..48 (GCAAAAA..TTTTTGC) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 284 nt
>oriT_pRHB37-C09_28
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTTCTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCGACACCGCTTTGTAGGGGTGGTACTGACTATTTTCATAAAAAACATAATTTTATATTAGGGGTACTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTTCTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCGACACCGCTTTGTAGGGGTGGTACTGACTATTTTCATAAAAAACATAATTTTATATTAGGGGTACTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Host bacterium
| ID | 1776 | GenBank | NZ_JABXSH010000028 |
| Plasmid name | pRHB37-C09_28 | Incompatibility group | ColpVC |
| Plasmid size | 2590 bp | Coordinate of oriT [Strand] | 678..961 [+] |
| Host baterium | Escherichia fergusonii strain RHB37-C09 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |