Detailed information of oriT

oriT


The information of the oriT region


oriTDB ID   101325
Name   oriT_pRHB37-C07_26 in_silico
Organism   Escherichia fergusonii strain RHB37-C07
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JABXSI010000026 (2282..2565 [-], 284 nt)
oriT length   284 nt
IRs (inverted repeats)      245..250, 253..258  (CGCCCC..GGGGCG)
 184..189, 197..202  (ATAAAA..TTTTAT)
 130..136, 150..156  (GCGGTGT..ACACCGC)
 31..37, 42..48  (GCAAAAA..TTTTTGC)
Location of nic site      _
Conserved sequence flanking the
  nic site  
 
 _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 284 nt

>oriT_pRHB37-C07_26
GTTCTCATGCCTGAAATGCCCACACCCCACGCAAAAACAATTTTTTGCTGATTTTTCTTTATAAATAGAGAGTTATGACAAATTAGTTTCTCTTGCTCTCTTTGTGATATTTAAAAAAGCGGTGTCGGCGCGGTGTTGTAGCTGCGCCGACACCGCTTTGTAGGGGTGGTACTGACTATTTTCATAAAAAACATAATTTTATATTAGGGGTACTGCTAGCGGCGCGGTGTGTTTTTTTACAGGACGCCCCTGGGGGCGCTGCTAGGGGTGTCTGTTCAGATATG

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Host bacterium


ID   1769 GenBank   NZ_JABXSI010000026
Plasmid name   pRHB37-C07_26 Incompatibility group   ColpVC
Plasmid size   2590 bp Coordinate of oriT [Strand]   2282..2565 [-]
Host baterium   Escherichia fergusonii strain RHB37-C07

Cargo genes


Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -