Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101283
Name   oriT1_22|unnamed2 in_silico
Organism   Aeromonas veronii strain 22
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JAEMTZ010000184 ( 3889..3920 [-], 32 nt)
oriT length   32 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 32 nt

>oriT1_22|unnamed2
GGGTGTCGGGGCGCAGCACCTGACCAAGTCAC

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1235 GenBank   WP_199416996
Name   mobV_JHD43_RS24340_22|unnamed2 insolico UniProt ID   _
Length   640 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 640 a.a.        Molecular weight: 70916.11 Da        Isoelectric Point: 9.7796

>WP_199416996.1 MobV family relaxase [Aeromonas veronii]
MGQPLTVLRVEKLKSWGDVGGAGSHNLRHRDTPNADPSRTHLNRHLVGQPTDQLAEVVREKIGDQTIRKN
AVLAFEVVMSASPEYFRPDDPGAAGTWNEQRLARWEAASMDWLRKQYGDRVVSAVLHLDEQTPHIQAVVV
PLDDKGKLNCRAMLGGSRQTLRDLQTSYSKGVEHLGIARGIEGSKAKHKTVSEYYREAESAFEPLPEVKT
RNPGQAPAEPEKLGFFAGPEKKGQWERDRAKWERQQAAWEAQRKQHMAEVNAQRDAAVETARRHQAQAAK
AAALAKEVQTLKTENSRLLAERQTLKAEADRLRGTDLCDVLTKVYGAQEAADSRPSYRTRKFELGEHGNI
AITGELWTDNATGKGGKGAINLVMYLEGWQQDRYKDAVRVLAEHFSPESVAADMGRKAALEGATAVSKLK
QEPLPMPEPVLSNWPRARRYLEDVRKIPGKLIDWASKRGLIFADERANLVFVRDGGGCFKRGSYDPKDRP
AFKQTLGRDAGPMVLPGNDGRVFVTEGPIDALALKAINPASTVLATGGNCPIERLKPYLDRYATERVFLA
HDSDPAGNDQAQRLKDAYKPRSGADVVRWGTNMVDGRKKDWSAVLMARPSLSTFELDQRGEIRAPEPTRP
GRSSPGMSLG

  Protein domains


Predicted by InterproScan.

Plasmid recombination enzyme (Mob_Pre)

(6-195)

Toprim-like (Toprim_2)

(513-604)


  Protein structure



No available structure.




Host bacterium

ID   1727 GenBank   NZ_JAEMTZ010000184
Plasmid name   22|unnamed2 Incompatibility group   -
Plasmid size   23905 bp Coordinate of oriT [Strand]   7843..7874 [+]; 3889..3920 [-]
Host baterium   Aeromonas veronii strain 22

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -