Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101275
Name   oriT_p5303-cfrD in_silico
Organism   Enterococcus faecalis strain T-JH-Sg53-1
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_JAJUWW010000002 (7305..7441 [-], 137 nt)
oriT length   137 nt
IRs (inverted repeats)      21..28, 42..49  (AAAAGGGG..CCCCTTTT)
 25..30, 39..44  (GGGGAA..TTCCCC)
Location of nic site      104..105
Conserved sequence flanking the
  nic site    		  GCTTGCAGTA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 137 nt

>oriT_p5303-cfrD
CGACACAATCCAAAGGGGATAAAAGGGGAAAGTGAAACTTCCCCCTTTTCAAGCCACATTGTAATACAAGAACGAAGTGCTTTGTATTACAATGTGATAGCTTGCAGTATTTATGGATTTATATGGTCTATTTTGTT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1230 GenBank   WP_222149748
Name   Relaxase_LZF91_RS14280_p5303-cfrD insolico UniProt ID   _
Length   410 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 410 a.a.        Molecular weight: 47590.16 Da        Isoelectric Point: 8.1324

>WP_222149748.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Lactobacillales]
MATIAKISNGASAASALNYALGQDRPMHEKTEQWLQDHQLERPVELTNCRAVAVGGTNGIDPFIAKEQFD
VVRQLHNQTKESNQVLRITQSFALDELNPKVQKDWQKANDLGVELAENLYPNHQSAVYTHLDGKNHVLHN
HIIVNKVNLETGKKLREQKGESVQRAREMNDRLASRENWHILEPPKERQTETEKELIAKNEYSYMDDLRE
RINKSLQDVSVSSYETFKARLSDNGVILSERGQTFSYAFLDANNKQRRARESRLGSDFGRETILHELENR
ARQNEFRAVEQREPAITPLERDTQQRESEIVSLEQAIEPRKSEALKRESTINRFIDTIKQLAGRVPELTQ
RVTRKLKQTKEKILDDFERRFSKDMKNDEQEQQKSLEKQANRDVQSEKKPTKDHDRGMSR

  Protein domains


Predicted by InterproScan.

Relaxase/Mobilisation nuclease domain (Relaxase)

(9-280)


  Protein structure



No available structure.




Host bacterium

ID   1719 GenBank   NZ_JAJUWW010000002
Plasmid name   p5303-cfrD Incompatibility group   -
Plasmid size   17108 bp Coordinate of oriT [Strand]   7305..7441 [-]
Host baterium   Enterococcus faecalis strain T-JH-Sg53-1

Cargo genes

Drug resistance gene   Cfr(D)
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -