Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101252 |
| Name | oriT_EcSS20|unnamed2  |
| Organism | Escherichia coli strain EcSS20 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_SDDW01000048 (1065..1242 [-], 178 nt) |
| oriT length | 178 nt |
| IRs (inverted repeats) | 104..109, 123..128 (ACAATC..GATTGT) |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 178 nt
>oriT_EcSS20|unnamed2
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGAAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACCACAAAAAGGCATTACGGCAGAA
GATGTAACTCCGTGCGCGATGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTGAGCTGGCATAATGCACGGAAAATCACGAAGTGCGCACTTATACAATCTCCACTCCGTTTCGATTGTGTGCGCCCTGCGGGGCTGAAAGAAAACCACAAAAAGGCATTACGGCAGAA
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1220 | GenBank | WP_148162234 |
| Name | mobQ_ERL57_RS24185_EcSS20|unnamed2 |
UniProt ID | _ |
| Length | 354 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 354 a.a. Molecular weight: 39726.86 Da Isoelectric Point: 9.2349
>WP_148162234.1 MULTISPECIES: MobQ family relaxase, partial [Enterobacteriaceae]
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSL
MAIYHLSMKIISRNSGYSAVASAAYRSGSLMLDERTGLTHDYTRKSGVAEAVILTPATAPAWCTNRAELW
NAVEKAERRKNSQLAREIELAIPRELPQDAARETVLAFVRENFVSQGMIADVAFHHMDKTNPHAHIMLTT
RAVGPAGFGGKVRDWNDRTHAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKTPGIHLGKSACAM
ETRGIETERGEQNRLINRLNLEIQISRTELRNSGLTEPARRVADLLNIVLPDNATSYTLRDIIEALPKDS
NAAWKLTSNAMSMMADMQATRRRWEELNTERKEAMSHAASLKKSSPFSSGFSRIPLMQWAAPEYRSEQGK
IQSL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1696 | GenBank | NZ_SDDW01000048 |
| Plasmid name | EcSS20|unnamed2 | Incompatibility group | Col8282 |
| Plasmid size | 4137 bp | Coordinate of oriT [Strand] | 1065..1242 [-] |
| Host baterium | Escherichia coli strain EcSS20 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | - |