Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101245
Name   oriT_FWSEC0066|unnamed7 in_silico
Organism   Escherichia coli strain FWSEC0066
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_RREL01000134 (4828..5002 [+], 175 nt)
oriT length   175 nt
IRs (inverted repeats)      101..106, 120..125  (ACAATC..GATTGT)
 47..52, 58..63  (AGTTTA..TAAACT)
 46..51, 54..59  (TAGTTT..AAACTA)
Location of nic site      65..66
Conserved sequence flanking the
  nic site    		  ACTGGCATAA
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 175 nt

>oriT_FWSEC0066|unnamed7
GTGACTCCGTGCGCGGTGAAAAATCGCATTTTAGCGCGTCACTGGTAGTTTAAAAACTAAACTGGCATAATGCACGGCACATCACGAAATGCGCACTTATACAATCTCCACTTCGTTTCGATTGTGTGCGGTCTGCGACGCTAAAAGAAAACGGCAAAAAGGCATTACGGCAGAA

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1215 GenBank   WP_096997065
Name   mobQ_C9Z16_RS26115_FWSEC0066|unnamed7 insolico UniProt ID   _
Length   732 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 732 a.a.        Molecular weight: 83496.53 Da        Isoelectric Point: 8.0816

>WP_096997065.1 MobQ family relaxase, partial [Escherichia coli]
MAIYHLSMKIISRKNGYSAVASAAYRSGSVIPDDRTGLIHDYTRKRGVDDAVILTPANAPSWCGDRSVLW
NAVEKAEQRRNSQLAREIELAIPREISREAARETVLAFVRENFVSRGMIADVAFHHMDRTNPHAHIMLTT
RAIGETGFAGKVRDWNDRALAETWRASWADHANRALANAGYQEEIDHRSYERQGLEKAPGLHLGKAACAM
EKRGMETERGEQNRLINSLNLEIQVSRTQLALRTVQETQRKRELSDAARRAAEALNLTIPAANASADTLR
EFIATLPQECGNAWEMTPEFLAMSGKVNDIEREGNALLKEQAILEKEMTGLKKARPVASLLSEIPLMTWA
EPEYRKRQLRFWKLGKQIESLRRTYRAVKERDIPARRQAFETQWNTWIAPGMAELKEKLSAREAERRREE
AEAEARRKEQEHEARLKRHDNHRLSRETALVGVITDLGRAREPGTGRITRYMMLSNRAGEFTVWGDELAH
YPQSVHDPVNVYLSPGGAVMVSDIREGMPESHETMARPERVRMYSGATVRHVLEQMRQGWPSYGFPALPH
HWPDNFYFSDDRRPVASPLPSAQRVDITADAVPEQLMPVVFSREGNSRTLNLLLCKGPEEMLVGFVRREG
GFCPVLVLPSPDYSHLIVSTITENGVCLAGYGEAINHDEDTPYPPEPHLMQFRLKGHHDRLLAAVHKPEE
MPDYLFRQLGFNQTWHEWKRDEQHRQQQRRPG

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(18-213)


  Protein structure



No available structure.




Host bacterium

ID   1689 GenBank   NZ_RREL01000134
Plasmid name   FWSEC0066|unnamed7 Incompatibility group   Col156
Plasmid size   7197 bp Coordinate of oriT [Strand]   4828..5002 [+]
Host baterium   Escherichia coli strain FWSEC0066

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   -