Detailed information of oriT

oriT

The information of the oriT region

• oriTDB ID: 101211
• Name: oriT_TMW 2.1521|unnamed5
• Organism: Staphylococcus xylosus strain TMW 2.1521
• Sequence Completeness: -
• NCBI accession of oriT (coordinates [strand]): NZ_JAEMUF010000008 (4054..4151 [-], 98 nt)
• oriT length: 98 nt
• IRs (inverted repeats): _
• Location of nic site: _
• Conserved sequence flanking the nic site: _
• Note: Predicted by oriTfinder 2.0

oriT sequence

• Length: 98 nt

>oriT_TMW 2.1521|unnamed5
TCTGCTGAAACTTTGAATATGAGTGTGGCTTCTTTCGTTAAGAAAAAGGCACAAGGCAGTCGATTGGTAGCGCCCAAATTAGATAAAGAGTCGCGACA

oriT secondary structure

Predicted by RNAfold.

Relaxase

Relaxase_JGY89_RS14335_TMW 2.1521|unnamed5

• ID: 1202
• GenBank: WP_225526618
• Name: Relaxase_JGY89_RS14335_TMW 2.1521|unnamed5
• UniProt ID: _
• Length: 321 a.a.
• Note: Predicted by oriTfinder 2.0

Relaxase protein sequence

• Length: 321 a.a.
• Molecular weight: 37569.62 Da
• Isoelectric Point: 7.5114

>WP_225526618.1 relaxase/mobilization nuclease domain-containing protein [Staphylococcus xylosus]
MATTKISSTKSTSRAINYAEKRAEEKSALNCDIDYAKSSFKATRELYGKTNGNQGHVIIQSFKPDEVTPE
QCNQLGLELAEKIAPNHQVAVYTHNDTDHVHNHIVINSVDLETGKKFYNNKQALKDIRQANDEISKTHNL
SIPDKQAQIRYTQAEQNIMDKSEDVKASWKNQIRIAIEDTKEQAADFDEFNELLKPKGVEIARVTDKTIT
YKHIEEDKKVRGSKLGEDYNKEELDNGFRLEKQRRERQSERQIRPNIKATKADWDEFREENERRERERRE
QERRENERINAENERLRKQREQESRTTQSVNKKARGIDLEL

Protein domains

Predicted by InterproScan.

• Relaxase/Mobilisation nuclease domain (Relaxase) (9-238)

Protein structure

No available structure.

Host bacterium

• ID: 1655
• GenBank: NZ_JAEMUF010000008
• Plasmid name: TMW 2.1521|unnamed5
• Incompatibility group: -
• Plasmid size: 4421 bp
• Coordinate of oriT [Strand]: 4054..4151 [-]
• Host baterium: Staphylococcus xylosus strain TMW 2.1521

Cargo genes

• Drug resistance gene: -
• Virulence gene: -
• Metal resistance gene: -
• Degradation gene: -
• Symbiosis gene: -
• Anti-CRISPR: -