Detailed information of oriT
oriT
The information of the oriT region
| oriTDB ID | 101210 |
| Name | oriT_TMW 2.1521|unnamed1  |
| Organism | Staphylococcus xylosus strain TMW 2.1521 |
| Sequence Completeness | - |
| NCBI accession of oriT (coordinates [strand]) | NZ_JAEMUF010000003 (11237..11331 [-], 95 nt) |
| oriT length | 95 nt |
| IRs (inverted repeats) | _ |
| Location of nic site | _ |
| Conserved sequence flanking the nic site |
_ |
| Note | Predicted by oriTfinder 2.0 |
oriT sequence
Download Length: 95 nt
>oriT_TMW 2.1521|unnamed1
TCGGCTGAAACTTTGAATATGAGTGTGCCTTCGTTTGTTAAAAACAAGGCACAAGGGGCTCGATTAGTGGCGCCCAAATTAGACAAAGTCACGCG
TCGGCTGAAACTTTGAATATGAGTGTGCCTTCGTTTGTTAAAAACAAGGCACAAGGGGCTCGATTAGTGGCGCCCAAATTAGACAAAGTCACGCG
Visualization of oriT structure
oriT secondary structure
Predicted by RNAfold.
Download structure file
Relaxase
| ID | 1201 | GenBank | WP_046838088 |
| Name | Relaxase_JGY89_RS13955_TMW 2.1521|unnamed1 |
UniProt ID | _ |
| Length | 329 a.a. | PDB ID | |
| Note | Predicted by oriTfinder 2.0 | ||
Relaxase protein sequence
Download Length: 329 a.a. Molecular weight: 37621.88 Da Isoelectric Point: 9.7700
>WP_046838088.1 MULTISPECIES: relaxase/mobilization nuclease domain-containing protein [Staphylococcaceae]
MATTKISATKSTSRAINYAEKRAEEKSGLNCDIDYAKSAFKASREVYGKTDGNQGHVIIQSFKPGEVTPE
QCNALGLELAEKIAPDHQVAIYTHSDTDHVHNHIVINAINLETGKKFNNNKQALKDVRQANDVVCRHHGL
SIPNNQAEMRYTQAEQNLIDKGKSSWKNDIRLAVDETQATDMESFQEQLRPKGIIVERVTDKTITYRHIE
ADKKVRGSKLGDFYDKGGISHGFEAEKQRRRRKYESKSTTPERTPKDQSPHRQPRTTLNWSAFDQSTQTL
FNERKRRERTERAEREAREQDDRARAARAKQIESEPTISKRTKGFDLEL
MATTKISATKSTSRAINYAEKRAEEKSGLNCDIDYAKSAFKASREVYGKTDGNQGHVIIQSFKPGEVTPE
QCNALGLELAEKIAPDHQVAIYTHSDTDHVHNHIVINAINLETGKKFNNNKQALKDVRQANDVVCRHHGL
SIPNNQAEMRYTQAEQNLIDKGKSSWKNDIRLAVDETQATDMESFQEQLRPKGIIVERVTDKTITYRHIE
ADKKVRGSKLGDFYDKGGISHGFEAEKQRRRRKYESKSTTPERTPKDQSPHRQPRTTLNWSAFDQSTQTL
FNERKRRERTERAEREAREQDDRARAARAKQIESEPTISKRTKGFDLEL
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
T4CP
| ID | 811 | GenBank | WP_225526601 |
| Name | t4cp2_JGY89_RS13985_TMW 2.1521|unnamed1 |
UniProt ID | _ |
| Length | 569 a.a. | PDB ID | _ |
| Note | Predicted by oriTfinder 2.0 | ||
T4CP protein sequence
Download Length: 569 a.a. Molecular weight: 65372.30 Da Isoelectric Point: 6.2174
>WP_225526601.1 ATP-binding protein [Staphylococcus xylosus]
MNNEKIAKVVSVLPDKIKISVNDIEKFKIDNEKFSVGSYLRVTDHDEGALLCVIETFEIANKDGEDNYIL
EALPLGFIDSNKKFIRGGNNITIPPTGVENAKRSEITKIYNSFESQDEFVFAKLLQDKSIPIPVNGNKFF
NKHLAIVGATGSGKSHTVSSILQQVLENKEPKNIALNNSHIVIFDIHNEYHSAFLDCNFLDSSNIKLPYW
LMNGEEIEEMFVESSEFQSYNQISLLRKVILSNKHKYNKEINNLSFDSPVKFDIEEVFNCITNLSKETLS
YNNNNEICFKDTDNLFYSEEDKYNKYFEKIFEFKEPVRSKVKKGPYNDGSLQKFITRLHNKINNQRLSFV
FGEESRDSTTEDVIKQLIGYLNTKNITIIDLSGIPFEVLSITVSLISRLLFDFAYMYKNNKDDNNFEDNP
LLLVYEEAHKYVPKLDKAKYNSSRVAIERITKEGRKYGISAAIVSQRPSEISETIFSQCSNFITMRLTNP
DDQRYIKKLLPDSLGGVTDSLATLKEGEGIIIGDSIVLPTLVKIKKCNPEPKSQSIKFLDNWTKQWYNFD
FEKVTKHWK
MNNEKIAKVVSVLPDKIKISVNDIEKFKIDNEKFSVGSYLRVTDHDEGALLCVIETFEIANKDGEDNYIL
EALPLGFIDSNKKFIRGGNNITIPPTGVENAKRSEITKIYNSFESQDEFVFAKLLQDKSIPIPVNGNKFF
NKHLAIVGATGSGKSHTVSSILQQVLENKEPKNIALNNSHIVIFDIHNEYHSAFLDCNFLDSSNIKLPYW
LMNGEEIEEMFVESSEFQSYNQISLLRKVILSNKHKYNKEINNLSFDSPVKFDIEEVFNCITNLSKETLS
YNNNNEICFKDTDNLFYSEEDKYNKYFEKIFEFKEPVRSKVKKGPYNDGSLQKFITRLHNKINNQRLSFV
FGEESRDSTTEDVIKQLIGYLNTKNITIIDLSGIPFEVLSITVSLISRLLFDFAYMYKNNKDDNNFEDNP
LLLVYEEAHKYVPKLDKAKYNSSRVAIERITKEGRKYGISAAIVSQRPSEISETIFSQCSNFITMRLTNP
DDQRYIKKLLPDSLGGVTDSLATLKEGEGIIIGDSIVLPTLVKIKKCNPEPKSQSIKFLDNWTKQWYNFD
FEKVTKHWK
Protein domains
Predicted by InterproScan.
Protein structure
No available structure.
Host bacterium
| ID | 1654 | GenBank | NZ_JAEMUF010000003 |
| Plasmid name | TMW 2.1521|unnamed1 | Incompatibility group | - |
| Plasmid size | 34997 bp | Coordinate of oriT [Strand] | 11237..11331 [-] |
| Host baterium | Staphylococcus xylosus strain TMW 2.1521 |
Cargo genes
| Drug resistance gene | - |
| Virulence gene | - |
| Metal resistance gene | - |
| Degradation gene | - |
| Symbiosis gene | - |
| Anti-CRISPR | AcrIIA21 |