Detailed information of oriT

oriT

The information of the oriT region


oriTDB ID   101208
Name   oriT_pDZ3 in_silico
Organism   Lactiplantibacillus pentosus strain DZ35
Sequence Completeness      -
NCBI accession of oriT (coordinates [strand])   NZ_VUBB01000008 (1498..1518 [-], 21 nt)
oriT length   21 nt
IRs (inverted repeats)     _
Location of nic site      _
Conserved sequence flanking the
  nic site    		  _
Note   Predicted by oriTfinder 2.0

  oriT sequence  


Download         Length: 21 nt

>oriT_pDZ3
AGTGGGGTGTAAGTGCGCATT

Visualization of oriT structure

  oriT secondary structure

Predicted by RNAfold.

Download structure file


Relaxase

ID   1199 GenBank   WP_159259013
Name   mobQ_F0M15_RS17500_pDZ3 insolico UniProt ID   _
Length   687 a.a. PDB ID   
Note   Predicted by oriTfinder 2.0

  Relaxase protein sequence


Download         Length: 687 a.a.        Molecular weight: 80639.30 Da        Isoelectric Point: 9.2464

>WP_159259013.1 MobQ family relaxase [Lactiplantibacillus pentosus]
MAIFHMSFSNISAGKGRSAIASAAYRSGEKLFDDQEGRHYFYARSVIPESFILTPKNAPAWASDREKLWN
EVERTDWRANSRYAKEFNVALPVELSEDEQKELLTKYVQENFVDQGMVADVAIHRDHQDNPHAHVMLTNR
PFNPDGTWGIKSKKQYILDENGNKMYTGTSKYPKSRKILMVDWDKKEKIIEWRHNWAVSVNQVLEQKNIT
DRISEKSFVEQGIADTPMQHEGINSKRHERKAFNQQVENYRKSKAGYKNMQEKVINRGHLDSLSKHFSFN
EKKVVKELSHELKTYISLESLDDKRRMLFNWKNSTLIKHAVGEDVTKQLLTINQQESSLKKADELLNKVV
DRTTKKLYPELDFEQTTAAERRELIKETNSEQTIFKGSELNERLMNIRDDLLTRQLLTFTKRPYVGWKLL
MQQEKEVKIELKYTLMIHDDNLESLEHVDQGLLEKYSPTEQQKITRAVKDLRTIMAVKQVIQTQYHEVLK
RAFPKGDLDGLPLTKQEQAYTAVMYYDPTLKPLKVETMEQWQSNPPQVFSTQEHQLGLAYLSGQLSLDQL
ENHHLQRVLKHDGTKQLFFGECKVDPTIKNSQIEKIQKQLREQQDKDDQYRKENIGHYQPLNYKPVSPSY
YLKTAFSNAIMTALYARDEDYQRQKQAQGLKETEWEMTKKHRQHQTRNRHEDGGMHL

  Protein domains


Predicted by InterproScan.

MobA/MobL family (MobA_MobL)

(17-241)

Nicking enzyme C-terminal middle helical domain (NES_C_h)

(276-384)


  Protein structure



No available structure.




Host bacterium

ID   1652 GenBank   NZ_VUBB01000008
Plasmid name   pDZ3 Incompatibility group   -
Plasmid size   49918 bp Coordinate of oriT [Strand]   1498..1518 [-]
Host baterium   Lactiplantibacillus pentosus strain DZ35

Cargo genes

Drug resistance gene   -
Virulence gene   -
Metal resistance gene   -
Degradation gene   -
Symbiosis gene   -
Anti-CRISPR   AcrIIA7